Job Description P06999 Confidence 99.64% Date Thu Jan 5 10:59:52 GMT 2012 Rank 47 Aligned Residues 174 % Identity 14% Template c3mbjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase; PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form) Resolution 2.10 Å

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		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.														.	.	.	.	.	180	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	E	F	R	Q	L	E	E	Q	V	L	E	I	E	S	G	A	I	L	V	I	S	G	S	L	P	P	G	V	K	L	E	K	L	T	Q	L	I	S	A	A	Q	K	Q	G	I	R	C	I	V	D	S	S	G	E	A	L	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	A	I	G	N	I	E
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	E	X	P	K	I	I	A	E	W	K	K	L	E	V	Q	F	D	A	I	Y	T	G	Y	L	G	S	P	R	Q	I	Q	I	V	S	D	F	I	K	D	F	R	Q	P	D	S	L	I	V	A	D	P	V	L	G	D	N	G	R	L	Y	T	N	F	D	X	E	X	V	K	E	X	R	H	L	I	T	K	A	D
Template Known Secondary structure		T	T												T				S									S																	T	T												T	T				T	T														T	T		S
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.					.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																				.	.	.																									.	.	.	.
Query SS confidence																				.	.	.																									.	.	.	.
Query Sequence		L	V	K	P	N	Q	K	E	L	S	A	L	V	N	R	E	L	T	.	.	.	Q	P	D	D	V	R	K	A	A	Q	E	I	V	N	S	G	K	A	K	R	V	V	V	S	.	.	.	.	L	G	P	Q	G	A	L	G	V	D	S	E	N	C	I	Q	V	V	P	P	P	V	K	S	Q	S	T	V	G	A	G
Query Conservation																				.	.	.																									.	.	.	.
Alig confidence																				.	.	.																									.	.	.	.
Template Conservation
Template Sequence		V	I	T	P	N	L	T	E	L	F	Y	L	L	D	E	P	Y	K	A	D	S	T	D	E	E	L	K	E	Y	L	R	L	L	S	D	K	G	P	Q	V	V	I	I	T	S	V	P	V	H	H	K	T	S	V	Y	A	Y	N	R	Q	G	N	R	Y	W	K	V	T	C	P	Y	L	P	A	H	Y	P	G	T	G
Template Known Secondary structure						B									T					S																T	T	S		S																				T	T	T	T											S				T	T
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	M	V	G	A	M	T	L	K	L	A	E	N	A	S	L	E	E	M	V	R	F	G	V	A	A	G	S	A	A	T	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	T	F	T	S	V	I	T	G	S	L	X	Q	G	D	S	L	P	X	A	L	D	R	A	T	Q	F	I	L	Q	G	I	R	A
Template Known Secondary structure														T	T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions