Job Description P06999 Confidence 100.00% Date Thu Jan 5 10:59:52 GMT 2012 Rank 38 Aligned Residues 273 % Identity 18% Template c3lhxA_ PDB info PDB header:transferase Chain: A: PDB Molecule:ketodeoxygluconokinase; PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri Resolution 1.87 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.					.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.														.
Query SS confidence																																																				.	.	.	.														.
Query Sequence		V	R	I	Y	T	L	T	L	A	P	S	L	D	S	A	T	I	T	P	Q	I	Y	P	E	G	K	L	R	C	T	A	P	V	F	E	P	G	G	G	G	I	N	V	A	R	A	I	A	H	L	.	.	.	.	G	G	S	A	T	A	I	F	P	A	G	G	A	.	T	G	E	H	L	V	S	L	L	A	D	E
Query Conservation																																																				.	.	.	.														.
Alig confidence									.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.														.
Template Conservation									.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	I	A	V	I	G	.	E	C	X	I	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	D	V	K	R	G	F	G	G	D	T	L	N	T	S	V	Y	I	A	R	Q	V	D	P	A	A	L	T	V	H	Y	V	T	A	L	G	T	D	S	F	S	Q	Q	X	L	D	A	W	H	G	E
Template Known Secondary structure								S	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																					T	T	S		T	T	T											S	S												T	T
Template Predicted Secondary structure									.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.		.	.	.	.	.	.															.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																																			.	.	.
Query SS confidence																																																																			.	.	.
Query Sequence		N	V	P	V	A	T	V	E	A	K	D	W	T	R	Q	N	L	H	V	H	V	E	A	S	G	E	Q	Y	R	F	V	M	P	G	A	A	L	N	E	D	E	F	R	Q	L	E	E	Q	V	L	E	I	E	S	G	A	I	L	V	I	S	G	S	L	P	.	.	.	P	G	V	K	L	E	K	L	T	Q	L	I
Query Conservation																																																																			.	.	.
Alig confidence																								.																																											.	.	.
Template Conservation																								.
Template Sequence		N	V	D	T	S	L	T	Q	R	X	E	N	R	L	P	G	L	Y	Y	I	E	T	.	E	R	T	F	Y	Y	W	R	N	E	A	A	A	K	F	W	L	A	S	E	Q	S	A	A	I	C	E	E	L	A	N	F	D	Y	L	Y	L	S	G	I	S	L	A	I	L	S	P	T	S	R	E	K	L	L	S	L	L
Template Known Secondary structure		T				T	T					T	T											.									T	T		G	G	G	G	T	T	S	S	S	S									T	T		S											T	S
Template Predicted Secondary structure																								.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.											.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	A	Q	K	Q	G	I	R	C	I	V	D	S	S	G	E	A	L	S	.	.	.	.	.	.	.	.	.	.	A	A	L	A	I	G	N	I	E	L	V	K	P	N	Q	K	E	L	S	A	L	V	N	R	E	L	T	Q	P	D	D	V	R	K	A	A	Q	E	I	V	N	S	G	K	A	K	R	V	V	V
Query Conservation																						.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Conservation																																																									.	.	.	.	.
Template Sequence		R	E	C	R	A	K	G	G	K	V	I	F	D	N	N	Y	R	P	R	L	W	A	S	K	E	E	T	Q	Q	V	Y	Q	Q	X	L	E	C	T	D	I	A	F	L	T	L	D	D	E	D	A	L	W	G	Q	Q	.	.	.	.	.	P	V	E	D	V	I	A	R	T	H	N	A	G	V	K	E	V	V	V	K
Template Known Secondary structure							T	T											G	G	G	S	S														T	T		S																	.	.	.	.	.												T	T		S
Template Predicted Secondary structure																																																									.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.						.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.				.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		S	L	G	P	Q	G	A	L	G	V	D	S	E	N	C	I	Q	V	V	P	.	.	.	P	P	V	K	S	Q	S	T	V	G	A	G	D	S	M	V	G	A	M	T	L	K	L	A	E	N	A	S	L	E	E	M	V	R	F	G	V	A	A	G	S	A	A	T	L	N	Q	G	T	R	L	C
Query Conservation																						.	.	.
Alig confidence																						.	.	.
Template Conservation
Template Sequence		R	G	A	D	S	C	L	V	S	I	A	G	E	A	L	V	D	V	P	A	V	K	L	P	K	E	K	V	I	D	T	T	A	A	G	D	S	F	S	A	G	Y	L	A	V	R	L	T	G	G	S	A	E	N	A	A	K	R	G	H	L	T	A	S	T	V	I	Q	Y	R	G	A	I	I	P
Template Known Secondary structure			T	T								T	T	S												G	G	G					T	T														T	T	T																		T	T	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions