Return to main results Retrieve Phyre Job Id

Job DescriptionP06999
Confidence100.00%DateThu Jan 5 10:59:52 GMT 2012
Rank41Aligned Residues282
% Identity13%Templatec3kd6B_
PDB info PDB header:transferaseChain: B: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of nucleoside kinase from chlorobium tepidum in2 complex with amp
Resolution1.88 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.... .....60.........70.........80..
Predicted Secondary structure 




















.






Query SS confidence 


















































.



























Query Sequence  IYTLTLAPSLDSATITPQIYPEGKLRCTAPVFEPGGGGINVARAIAHLGGS. ATAIFPAGGATGEHLVSLLADENVPVAT
Query Conservation 
     
  

                       

   


  
  

  .
  
  

 
 
  
   
   

    
Alig confidence 




.






..........



























.



























Template Conservation 




.    
 
..........  
        

   
 
  
  

   
      
 
 
      
   

    
Template Sequence  LLVIG. SLAFDDI. . . . . . . . . . ETPFGRSDNTLGGSSTYIALSASYFTDEPIRXVGVVGSDFGKEHFDLLHAKNIDTRG
Template Known Secondary structure  S.

..........
SS

TTT
SS

TTS
TT
Template Predicted Secondary structure 
.

..........



















Template SS confidence 















































































   3.... ..10.... .....20.........30.........40.........50.........60.........70.
 
   83..... .90.........100.........110.........120.........130.........140.........150.........160.
Predicted Secondary structure 


.




























Query SS confidence 





.








































































Query Sequence  VEAKDW. TRQNLHVHVEASGEQYRFVMPGAALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQGI
Query Conservation 
     .  
                                          
                           
Alig confidence 





.






















...
























.....
















Template Conservation          
                     ...                         .....                 
Template Sequence  IQVIEDGKTFRWAGRYHYDXNTRDTLDTQL. . . NVFAEFDPHVPQYYRDSKFVCLGNI. . . . . DPELQLKVLDQIDDPKL
Template Known Secondary structure  TT



TTSS

...GGGTT





GGGTT
S
SS.....
TT
SS
S
Template Predicted Secondary structure 













...













.....



Template SS confidence 















































































   72.......80.........90.........100. ........110.........120...... ...130.........140...
 
   162.......170...... ...180.........190.........200.........210.........220.........230.......
Predicted Secondary structure 








....






















Query SS confidence 














. . . .




























































Query Sequence  RCIVDSSGEALSAAL. . . . AIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSEN
Query Conservation   
             ....     


  
  
   
                 
         
               
Alig confidence 














....





















.....

































Template Conservation                      
   
    
  
        .....                 


 
  
         
Template Sequence  VVCDTXNFWIEGKPEELKKVLARVDVFIVNDSEARLLSGDP. . . . . NLVKTARIIREXGPKTLIIKKGEHGALLFTDNGI
Template Known Secondary structure 


TT
SS
S.....
TTS
S
TTS
TT
Template Predicted Secondary structure 

















.....











Template SS confidence 















































































   144.....150.........160.........170.........180.... .....190.........200.........210........
 
   238.240.........250.........260.........270.. .......280.........290.. .......300.........
Predicted Secondary structure 















.....




...





Query SS confidence 


































. . . . .



















. . .
















Query Sequence  CIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENASL. . . . . EEMVRFGVAAGSAATLNQGT. . . RLCSHDDTQKIYAYLSR
Query Conservation            










 

 
  
  
   .....  

  
   

      
 ...  
   

         
Alig confidence 


































.....



















...
















Template Conservation            










 



  
  
          
   
   

  
   
          

         
Template Sequence  FAAPAFPLESIYDPTGAGDTFAGGFIGHLARCGNTSEAEXRKAVLYGSAXASFCVEQFGPYRYNDLDLLEVDDRYQSFLE
Template Known Secondary structure 


TT


S

TT


STTSSTTGGGGT

Template Predicted Secondary structure 































Template SS confidence 















































































   219220.........230.........240.........250.........260.........270.........280.........290........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions