Job Description P52119 Confidence 92.92% Date Thu Jan 5 12:05:25 GMT 2012 Rank 17 Aligned Residues 74 % Identity 22% Template c2l52A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:methanosarcina acetivorans samp1 homolog; PDBTitle: solution structure of the small archaeal modifier protein 1 (samp1)2 from methanosarcina acetivorans Resolution UNK

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																		.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query SS confidence																		.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query Sequence		G	K	I	A	V	E	V	A	Y	A	L	P	E	K	Q	Y	.	.	L	Q	R	V	T	L	Q	E	G	A	T	V	E	E	A	I	R	A	S	G	L	L	E	L	R	T	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	T	K	N	K	V	G	I	Y	S	R	P	A	.	.	.	.
Query Conservation																		.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Alig confidence																		.	.								.											.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation																											.											.	.
Template Sequence		H	M	A	E	V	K	V	K	L	F	A	N	L	R	E	A	A	G	T	P	E	L	P	L	S	.	G	E	K	V	I	D	V	L	L	S	.	.	L	T	D	K	Y	P	A	L	K	Y	V	I	F	E	K	G	D	E	K	S	E	I	L	I	L	C	G	S	I	N	I	L	I	N	G	N	N	I	R	H	L	E
Template Known Secondary structure												T							S	S	S						.		S	S								.	.						G	G	G	T	T	T	S	B		S			T	T	S	S				B		S	S						T	T	S		G	G	G	T	T
Template Predicted Secondary structure																											.											.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	S	D	S	V	H	D	G	D	R	V	E	I	Y	R	P	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	E	T	L	L	K	D	S	D	E	I	G	I	L	P	P	V	S
Template Known Secondary structure		S	T	T	S				T	T										S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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