Job Description P39304 Confidence 96.89% Date Thu Jan 5 11:59:08 GMT 2012 Rank 224 Aligned Residues 196 % Identity 11% Template d1gk8a1 SCOP info TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Resolution 1.4

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		14	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.					.	.	.	.	.	.						40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.
Predicted Secondary structure														.									.	.	.	.							.	.	.	.	.																																		.	.
Query SS confidence														.									.	.	.	.							.	.	.	.	.																																		.	.
Query Sequence		T	M	D	S	A	Y	E	T	T	R	L	I	.	A	E	E	V	D	I	I	E	.	.	.	.	V	G	T	I	L	C	.	.	.	.	.	V	G	E	G	V	R	A	V	R	D	L	K	A	L	Y	P	H	K	I	V	L	A	D	A	K	I	A	D	A	G	K	I	L	.	.	S	R	M	C	F	E	A	N	A
Query Conservation														.									.	.	.	.							.	.	.	.	.																																		.	.
Alig confidence														.									.	.	.	.							.	.	.	.	.																																		.	.
Template Conservation
Template Sequence		S	A	K	N	Y	G	R	A	V	Y	E	C	L	R	G	G	L	D	F	T	D	D	E	N	V	N	S	Q	P	F	M	R	W	R	D	R	F	L	F	V	A	E	A	I	Y	K	A	Q	A	E	T	G	E	V	K	G	H	Y	L	N	A	T	A	G	T	C	E	E	M	M	K	R	A	V	A	K	E	L	G	V
Template Known Secondary structure																T	T		S	B				T	T		S	S	B	T	T	B																					S	S			B								S	S											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		82	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120											.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.																															.	.	.	.	.	.	.	.	.	.								.
Query SS confidence											.																															.	.	.	.	.	.	.	.	.	.								.
Query Sequence		D	W	V	T	V	I	C	C	A	.	D	I	N	T	A	K	G	A	L	D	V	A	K	E	F	N	G	D	V	Q	I	E	L	T	G	Y	W	T	W	E	.	.	.	.	.	.	.	.	.	.	Q	A	Q	Q	W	R	D	.	A	G	I	G	Q	V	V	Y	H	R	S	R	D	A	Q	A	A	G	V	A	W	G
Query Conservation											.																															.	.	.	.	.	.	.	.	.	.								.
Alig confidence											.																															.	.	.	.	.	.	.	.	.	.								.							.	.	.
Template Conservation																																																																		.	.	.
Template Sequence		P	I	I	M	H	D	Y	L	T	G	G	F	T	A	N	T	S	L	A	I	Y	C	R	D	N	G	L	L	L	H	I	H	R	A	M	H	A	V	I	D	R	Q	R	N	H	G	I	H	F	R	V	L	A	K	A	L	R	M	S	G	G	D	H	L	.	.	.	H	S	G	T	V	V	G	K	L	E	G	E	R
Template Known Secondary structure		S																									T								T	T						S		S	S	S	S																S			.	.	.					S	S	S	S	S
Template Predicted Secondary structure																																																																		.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.				.	.	.	330	.	.	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.																				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190		.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.								.							.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.								.							.
Query Sequence		E	A	D	I	T	A	I	K	R	L	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	G	F	K	V	T	V	T	G	G	L	A	L	E	D	L	P	L	F	K	G	I	.	P	I	H	V	F	I	A	.	G	R	S	I	R	D	.	A	A	S	P	V	E	A	A	R	Q	F
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.								.							.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.								.							.
Template Conservation
Template Sequence		E	V	T	L	G	F	V	D	L	M	R	D	D	Y	V	E	K	D	R	S	R	G	I	Y	F	T	Q	D	W	S	M	P	G	V	M	P	V	A	S	G	G	I	H	V	W	H	M	P	A	L	V	E	I	F	G	D	D	A	C	L	Q	F	G	G	G	T	L	G	H	P	W	G	N	A	P	G	A	A	A	N
Template Known Secondary structure														S					B	G	G	G	T	B		S															S	S			G	G	G										S	S	S					S					T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		208	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	S	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	A	L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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