Job Description P39304 Confidence 84.35% Date Thu Jan 5 11:59:08 GMT 2012 Rank 388 Aligned Residues 204 % Identity 13% Template c3stgA_ PDB info PDB header:transferase Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase; PDBTitle: crystal structure of a58p, del(n59), and loop 7 truncated mutant of 3-2 deoxy-d-manno-octulosonate 8-phosphate synthase (kdo8ps) from3 neisseria meningitidis Resolution 2.20 Å

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		3	.	.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.						.	.	.	.	30	.	.	.	.	.	.	.	.	.													40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure										.	.																.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.																.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	P	M	L	Q	V	A	L	.	.	D	N	Q	T	M	D	S	A	Y	E	T	T	R	L	I	.	.	.	.	.	A	E	E	V	D	I	I	E	V	G	T	I	L	C	.	.	.	.	.	.	.	.	.	.	.	.	V	G	E	G	V	R	A	V	R	D	L	K	A	L	Y	P	H	K	I	V	L	A	D	A
Query Conservation										.	.																.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.																.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation																																																																										.	.	.
Template Sequence		S	P	F	V	L	F	G	G	I	N	V	L	E	S	L	D	S	T	L	Q	T	C	A	H	Y	V	E	V	T	R	K	L	G	I	P	Y	I	F	K	A	S	F	D	K	P	R	S	S	I	H	S	Y	R	G	V	G	L	E	E	G	L	K	I	F	E	K	V	K	A	E	F	G	.	.	.	I	P	V	I	T
Template Known Secondary structure		S																																T									S			T	T	S		T	T	S				S																		.	.	.
Template Predicted Secondary structure																																																																										.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.
Query Sequence		K	I	A	D	A	G	K	I	L	S	R	M	C	F	E	A	N	A	D	W	V	T	V	I	C	C	A	D	I	N	T	A	K	G	A	L	D	V	A	K	E	F	N	G	D	V	Q	I	E	L	T	G	Y	W	T	W	E	Q	A	Q	Q	W	R	D	A	.	.	.	.	.	G	I	G	Q	V	V	Y	H	R	S
Query Conservation																																																																			.	.	.	.	.
Alig confidence									.	.								.															.	.																																	.	.	.	.	.
Template Conservation									.	.								.															.	.
Template Sequence		D	V	H	E	P	H	Q	.	.	C	Q	P	V	A	E	V	.	C	D	V	I	Q	L	P	A	F	L	A	R	Q	T	.	.	D	L	V	V	A	M	A	K	T	G	N	V	V	N	I	K	K	P	Q	F	L	S	P	S	Q	M	K	N	I	V	E	K	F	H	E	A	G	N	G	K	L	I	L	C	E	R	G
Template Known Secondary structure					S				.	.								.		S						G	G	G	T	T			.	.																			T	T	S		G	G	G											T	T
Template Predicted Secondary structure									.	.								.															.	.
Template SS confidence
		91	.	.	.	.	.	.			.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.								.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																																								.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.
Query Sequence		R	D	A	Q	A	A	G	V	A	W	G	E	A	D	I	T	A	I	K	R	L	S	D	M	G	F	K	V	T	V	T	G	G	L	A	L	E	D	.	.	.	.	.	.	.	L	P	L	F	K	G	I	P	I	H	V	F	I	A	G	R	S	I	R	D	A	A	S	P	V	E	A	A	R	Q	F	K	R	S	I
Query Conservation																																								.	.	.	.	.	.	.
Alig confidence																									.															.	.	.	.	.	.	.
Template Conservation																									.
Template Sequence		S	S	F	G	Y	D	N	L	V	V	D	M	L	G	F	G	V	M	K	Q	T	C	G	.	N	L	P	V	I	F	D	V	T	H	S	L	G	R	R	A	Q	A	L	D	L	A	L	A	G	M	A	T	R	L	A	G	L	F	L	E	S	H	P	D	P	S	A	L	P	L	H	L	L	E	D	F	L	I	R	I
Template Known Secondary structure					S	S	S						T										T	T	.	T							T	T	T	T		S	S	G	G	G										T	T			S												S			G	G	G
Template Predicted Secondary structure																									.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		212	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	L	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	L	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions