Job Description P39304 Confidence 99.93% Date Thu Jan 5 11:59:08 GMT 2012 Rank 40 Aligned Residues 207 % Identity 15% Template c3r89A_ PDB info PDB header:lyase Chain: A: PDB Molecule:orotidine 5'-phosphate decarboxylase; PDBTitle: crystal structure of orotidine 5-phosphate decarboxylase from2 anaerococcus prevotii dsm 20548 Resolution 1.84 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.																			.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.						.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.
Query Sequence		S	L	P	M	L	Q	V	A	L	D	N	Q	T	M	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	E	T	T	R	L	I	A	E	E	V	D	I	I	E	V	G	T	I	L	C	V	G	E	G	V	R	A	V	R	D	L	K	A	L	.	.	.	.	.	Y	P	H	K	I
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.
Alig confidence												.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.
Template Conservation												.
Template Sequence		K	N	G	F	V	C	I	G	L	D	.	S	S	I	D	Y	I	P	E	N	X	K	A	G	K	S	V	S	E	A	L	F	S	Y	N	K	E	I	I	D	Q	T	Y	D	V	C	A	I	Y	K	L	Q	I	A	Y	Y	E	S	Y	G	I	E	G	X	I	A	Y	R	D	T	L	S	Y	L	R	E	K	D	L	L
Template Known Secondary structure					S							.			G	G	G	S						T	T																			T	T	S		S											T	T																		T	T
Template Predicted Secondary structure												.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		59	60	.	.	.	.	.	.	.	.	.	70	.	.				.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.							.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.							.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	A	D	A	K	I	A	D	A	G	K	I	L	.	.	.	S	R	M	C	F	E	.	.	A	N	A	D	W	V	T	V	I	C	C	A	D	I	N	T	A	K	G	A	L	D	V	A	K	E	F	N	G	D	V	Q	I	E	L	T	G	Y	W	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																.	.	.							.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.							.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	I	G	D	V	K	R	S	D	I	A	A	S	A	K	X	Y	A	K	A	H	F	E	G	D	F	E	T	D	F	I	T	L	N	P	Y	X	G	X	D	S	I	E	P	Y	E	E	Y	I	E	K	G	D	K	G	V	F	V	L	L	R	T	S	N	P	G	A	K	D	F	E	V	L	P	V	D	G	E	E	F
Template Known Secondary structure																								S	G	G	G			S							T	T		G	G	G	T	G	G	G						T	T	S											S	G	G	G	G	T	T	T	T				T	T			T
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
						119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.					.	.	.	.
Predicted Secondary structure		.	.	.	.																															.	.	.																																				.	.	.	.
Query SS confidence		.	.	.	.																															.	.	.																																				.	.	.	.
Query Sequence		.	.	.	.	W	E	Q	A	Q	Q	W	R	D	A	G	I	G	Q	V	V	Y	H	R	S	R	D	A	Q	A	A	G	V	A	W	.	.	.	G	E	A	D	I	T	A	I	K	R	L	S	D	M	G	F	K	V	T	V	T	G	G	L	A	L	E	D	L	P	L	F	K	G	I	.	.	.	.	P	I	H	V
Query Conservation		.	.	.	.																															.	.	.																																				.	.	.	.
Alig confidence		.	.	.	.														.	.	.	.	.	.												.	.	.																																				.	.	.	.
Template Conservation																			.	.	.	.	.	.
Template Sequence		F	Y	K	V	G	D	K	X	R	E	L	N	E	K	Y	I	G	.	.	.	.	.	.	K	S	G	F	G	P	I	G	L	V	V	G	A	T	H	S	E	E	V	E	K	I	R	K	R	Y	D	K	X	F	F	L	I	P	G	F	G	A	Q	K	A	D	S	X	N	V	Y	K	L	L	E	G	L	N	G	G	V
Template Known Secondary structure														G	G	G			.	.	.	.	.	.	T	T	S																							T	T	T										S	S									T	T		B	T	T	B	S
Template Predicted Secondary structure																			.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.							.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.						.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.
Query SS confidence												.	.	.	.	.
Query Sequence		F	I	A	G	R	S	I	R	D	A	.	.	.	.	.	A	S	P	V	E	A	A	R	Q	F	K	R	S	I	A	E	L	W
Query Conservation												.	.	.	.	.
Alig confidence												.	.	.	.	.
Template Conservation
Template Sequence		V	N	S	S	R	A	I	L	K	N	W	Q	N	Y	E	D	G	S	E	K	V	G	Y	Y	A	R	K	K	A	I	E	T	Y
Template Known Secondary structure										T	G	G	G	G	S	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions