Job Description P39304 Confidence 98.46% Date Thu Jan 5 11:59:08 GMT 2012 Rank 121 Aligned Residues 213 % Identity 12% Template c3oixA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:putative dihydroorotate dehydrogenase; dihydroorotate PDBTitle: crystal structure of the putative dihydroorotate dehydrogenase from2 streptococcus mutans Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.																										.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	L	P	M	L	Q	V	A	L	D	N	Q	T	M	D	S	A	Y	E	T	T	R	L	I	A	E	E	V	D	I	I	E	V	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	C	V	G	E	G	V	R	A	V	R	D	L	K	A	L	Y	P
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	D	N	C	L	M	N	A	A	G	V	Y	C	M	T	R	E	E	L	A	A	I	D	H	S	E	A	G	S	F	V	T	T	G	T	L	E	E	R	A	G	N	P	Q	P	R	Y	A	D	T	K	L	G	S	I	N	S	M	G	L	P	N	L	G	I	N	Y	Y	L	D	Y	V	T	E	L	Q	K	Q	P	D
Template Known Secondary structure			S		S					T	T	S	S		S	S									T	S	S		S	B		B			B		S	S		B			S		S							S	S										B	S															S	T	T
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.												.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.																				.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Query SS confidence																			.	.																				.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Query Sequence		H	K	I	V	L	A	D	A	K	I	A	D	A	G	K	I	L	.	.	S	R	M	C	F	E	A	N	A	D	W	V	T	V	I	C	C	A	D	.	.	.	.	.	.	.	.	.	.	.	I	N	T	A	K	G	A	L	D	V	A	K	E	F	N	G	D	V	Q	I	E	L	T	G	Y	W	T	W	.	.	.
Query Conservation																			.	.																				.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Alig confidence																			.	.																				.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation
Template Sequence		S	K	N	H	F	L	S	L	V	G	M	S	P	E	E	T	H	T	I	L	M	V	E	A	S	K	Y	Q	G	L	V	E	L	N	L	S	C	P	N	V	P	G	P	Q	I	A	Y	D	F	E	T	T	D	Q	I	L	S	E	V	F	T	Y	F	T	K	P	L	G	I	K	L	P	P	Y	F	D	I	V	H	F
Template Known Secondary structure												S	S										T	T	T	S	S			S							S				S					G	G	G													T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150																					.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Q	A	Q	Q	W	R	D	A	G	I	G	Q	V	V	Y	H	R	S	R	D	A	Q	A	A	G	V	A	W	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	I	T	A	I	K	R	L	S	D	M	G	F	K	V	T	V	T	G	G	L	A	L	E	D	L	P	L
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	Q	A	A	A	I	F	N	Y	P	L	T	F	V	N	C	I	N	S	I	G	N	G	L	V	I	E	D	E	T	V	V	I	P	K	N	G	F	G	G	I	G	G	D	Y	V	K	P	T	A	L	A	N	V	H	A	F	Y	K	R	L	N	P	S	I	Q	I	I	G	T	G	G	V	T	G	R	D	A	F	E
Template Known Secondary structure													S																T	T						G	G	G							G	G	G													T	T	S		T	T	S						S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	G	I	P	I	H	V	F	I	A	G	R	S	I	R	D	A	A	S	P	V	E	A	A	R	Q	F	K	R	S	I	A	E	L	W
Query Conservation
Alig confidence																			.	.
Template Conservation																			.	.
Template Sequence		H	I	L	C	G	A	S	M	V	Q	I	G	T	A	L	H	Q	.	.	E	G	P	Q	I	F	K	R	I	T	K	E	L	A	I	M	T
Template Known Secondary structure						T		S					S						.	.			T
Template Predicted Secondary structure																			.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions