Job Description P39304 Confidence 99.95% Date Thu Jan 5 11:59:08 GMT 2012 Rank 31 Aligned Residues 200 % Identity 14% Template c3navB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.																					.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																							.															.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.															.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	L	Q	V	A	L	D	N	Q	T	M	D	S	A	Y	E	T	T	R	L	I	.	A	E	E	V	D	I	I	E	V	G	T	I	L	C	.	.	V	G	E	G	V	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	D	L	K	A	L	Y	P	H	K	I	V	L	A
Query Conservation																							.															.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.															.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	P	F	V	T	I	G	D	P	N	P	E	Q	S	L	A	I	M	Q	T	L	I	D	A	G	A	D	A	L	E	L	G	M	P	F	S	D	P	L	A	D	G	P	T	I	Q	G	A	N	L	R	A	L	A	A	K	T	T	P	D	I	C	F	E	L	I	A	Q	I	R	A	R	N	P	E	T	P	I	G	L
Template Known Secondary structure							T	T	S	S															T	T		S	S										T	T																T	T																		T	T	S
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		62	.	.	.	.	.					.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence		D	A	K	I	A	D	.	.	.	.	A	G	K	I	L	S	R	M	C	F	E	A	N	A	D	W	V	T	V	I	C	C	A	D	I	N	T	A	K	G	A	L	D	V	A	K	E	F	N	G	D	V	Q	I	E	L	T	G	Y	W	T	W	E	Q	A	Q	Q	W	R	D	A	G	I	G	Q	V	V	Y	H	R
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.																												.
Template Conservation																																							.
Template Sequence		L	M	Y	A	N	L	V	Y	A	R	G	I	D	D	F	Y	Q	R	C	Q	K	A	G	V	D	S	V	L	I	A	D	V	P	T	N	E	S	.	Q	P	F	V	A	A	A	E	K	F	G	I	Q	P	I	F	I	A	P	P	T	A	S	D	E	T	L	R	A	V	A	Q	L	G	K	G	Y	T	Y	L	L	S
Template Known Secondary structure										T	T													T							T	T	S		G	G	G		.										T	T									T	T			S												S
Template Predicted Secondary structure																																							.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.						.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																																					.																									.	.	.	.	.
Query SS confidence																																					.																									.	.	.	.	.
Query Sequence		S	R	D	A	Q	A	A	G	V	A	W	G	E	A	D	I	T	A	I	K	R	L	S	D	M	G	F	K	V	T	V	T	G	G	L	.	A	L	E	D	L	P	L	F	K	G	I	P	I	H	V	F	I	A	G	R	S	I	R	D	.	.	.	.	.	A	A	S	P	V	E	A	A	R	Q	F	K	R	S	I
Query Conservation																																					.																									.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.											.	.											.																									.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.											.	.
Template Sequence		R	A	P	V	H	.	.	.	.	.	.	.	.	A	L	L	E	R	L	Q	Q	F	D	.	.	A	P	P	A	L	L	G	F	G	I	S	E	P	A	Q	V	K	Q	A	I	E	A	G	A	A	G	A	I	S	G	S	A	V	V	K	I	I	E	T	H	L	D	N	P	A	K	Q	L	T	E	L	A	N	F	T
Template Known Secondary structure							.	.	.	.	.	.	.	.									T	T	.	.								S	S			S										T	T		S					S	S									T	T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.											.	.
Template SS confidence
		179	180	.	.	.									.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		212	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	L	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	A	M	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions