Job Description P39304 Confidence 97.43% Date Thu Jan 5 11:59:08 GMT 2012 Rank 194 Aligned Residues 204 % Identity 10% Template c3m9yB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from methicillin2 resistant staphylococcus aureus at 1.9 angstrom resolution Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.					.	.	70	.
Predicted Secondary structure															.																		.	.																																.	.							.	.	.	.
Query SS confidence															.																		.	.																																.	.							.	.	.	.
Query Sequence		M	S	L	P	M	L	Q	V	A	L	D	N	Q	.	T	M	D	S	A	Y	E	T	T	R	L	I	A	E	E	V	D	.	.	I	I	E	V	G	T	I	L	C	V	G	E	G	V	R	A	V	R	D	L	K	A	L	Y	P	H	K	I	V	L	A	.	.	D	A	K	I	A	D	.	.	.	.	A	G	K	I
Query Conservation															.																		.	.																																.	.							.	.	.	.
Alig confidence															.																		.	.																																.	.							.	.	.	.
Template Conservation
Template Sequence		M	R	T	P	I	I	A	G	N	W	K	M	N	K	T	V	Q	E	A	K	D	F	V	N	A	L	P	T	L	P	D	S	K	E	V	E	S	V	I	C	A	P	A	I	Q	L	D	A	L	T	T	A	V	K	E	G	K	A	Q	G	L	E	I	G	A	Q	N	T	Y	F	E	D	N	G	A	F	T	G	E	T
Template Known Secondary structure			S										S																				T	T	T									G	G	G										T	T	S	S	T	T						S				S	S	S	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.								90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.																			.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	R	M	C	F	E	A	N	A	D	W	V	T	V	I	C	C	.	.	.	.	.	.	.	A	D	I	N	T	A	K	G	A	L	D	V	A	K	E	F	N	G	D	V	Q	I	E	L	T	G	Y	W	T	W	E	Q	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	W	R
Query Conservation																				.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.																							.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.
Template Sequence		S	P	V	A	L	A	D	L	G	V	K	Y	V	V	I	G	H	S	E	R	R	E	L	F	H	E	T	D	E	E	I	N	K	K	A	H	A	I	F	K	H	G	M	T	P	I	I	.	C	V	G	E	T	D	E	E	R	E	S	G	K	A	N	D	V	V	G	E	Q	V	K	K	A	V	A	G	L	S	E	D
Template Known Secondary structure										T															S																	T	T						.											T	T														T	T	T
Template Predicted Secondary structure																																																	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.												.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		D	A	G	I	G	Q	V	V	Y	H	R	S	R	D	A	Q	A	A	G	V	A	W	G	E	A	D	I	T	A	I	K	R	L	S	D	M	.	.	.	.	.	.	.	.	.	.	.	G	F	K	V	T	V	T	G	G	L	A	L	E	D	L	P	L	F	K	G	I	.	P	I	H	V	F	I	A	G	R	S	I
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		Q	L	K	S	V	V	I	A	Y	E	P	I	W	A	I	G	T	G	K	S	S	T	S	E	D	A	N	E	M	C	A	F	V	R	Q	T	I	A	D	L	S	S	K	E	V	S	E	A	T	R	I	Q	Y	G	G	S	V	K	P	N	N	I	K	E	Y	M	A	Q	T	D	I	D	G	A	L	V	G	G	A	S
Template Known Secondary structure													G	G	G	S	S	S	S																							S						T	T	S						S				T	T	T						T	S	T	T							S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	A	A	S	P	V	E	A	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	V	E	D	F	V	Q	L	L	E
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions