Job Description P39304 Confidence 91.36% Date Thu Jan 5 11:59:08 GMT 2012 Rank 336 Aligned Residues 164 % Identity 12% Template c3ktsA_ PDB info PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365 Resolution 2.75 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.
Query SS confidence																																																																					.	.	.
Query Sequence		S	L	P	M	L	Q	V	A	L	D	N	Q	T	M	D	S	A	Y	E	T	T	R	L	I	A	E	E	V	D	I	I	E	V	G	T	I	L	C	V	G	E	G	V	R	A	V	R	D	L	K	A	L	Y	P	H	K	I	V	L	A	D	A	K	I	A	D	A	.	.	.	G	K	I	L	S	R	M	C	F	E
Query Conservation																																																																					.	.	.
Alig confidence																					.	.	.	.																		.	.	.										.	.														.	.	.
Template Conservation																					.	.	.	.																		.	.	.										.	.
Template Sequence		N	Q	S	I	I	P	A	A	H	N	Q	K	D	M	E	K	I	L	E	.	.	.	.	L	D	L	T	Y	M	V	M	L	E	T	H	V	A	Q	L	K	.	.	.	A	L	V	K	Y	A	Q	A	G	.	.	G	K	K	V	L	L	H	A	D	L	V	N	G	L	K	N	D	D	Y	A	I	D	F	L	C	T
Template Known Secondary structure		T								S	S	S							T	T	.	.	.	.	S	S								S			T	T	T			.	.	.									T	.	.	T							G	G	G			T				S
Template Predicted Secondary structure																					.	.	.	.																		.	.	.										.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.					.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
			79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure		.																																											.	.	.
Query SS confidence		.																																											.	.	.
Query Sequence		.	A	N	A	D	W	V	T	V	I	C	C	A	D	I	N	T	A	K	G	A	L	D	V	A	K	E	F	N	G	D	V	Q	I	E	L	T	G	Y	W	T	W	E	.	.	.	Q	A	Q	Q	W	R	D	A	G	I	G	Q	V	V	Y	H	R	S	R	D	A	Q	A	A	G	V	A	W	G	E	A	D	I	T
Query Conservation		.																																											.	.	.
Alig confidence		.									.	.	.	.						.	.	.																							.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.						.	.	.																																														.	.	.	.	.	.	.	.	.
Template Sequence		E	I	C	P	D	G	I	I	S	.	.	.	.	T	R	G	N	A	.	.	.	I	M	K	A	K	Q	H	K	M	L	A	I	Q	R	L	F	M	I	D	S	S	A	Y	N	K	G	V	A	L	I	Q	K	V	Q	P	D	C	I	E	L	L	P	G	I	I	.	.	.	.	.	.	.	.	.	P	E	Q	V	Q
Template Known Secondary structure		T	T			S					.	.	.	.	S					.	.	.							T	T											S																	S							T	T		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.						.	.	.																																														.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.					.	.	.	90	.				.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.										.	.	.	140	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		A	I	K	R	L	S	D	M	G	F	K	V	T	V	T	G	G	L	.	A	L	E	D	L	P	L	F	K	G	I	P	I	H	V	F	I	A	G	R
Query Conservation																				.
Alig confidence								.	.											.
Template Conservation								.	.
Template Sequence		K	M	T	Q	K	L	.	.	H	I	P	V	I	A	G	G	L	I	E	T	S	E	Q	V	N	Q	V	I	A	S	G	A	I	A	V	T	T	S	N
Template Known Secondary structure								.	.								S	S			S									T	T	T
Template Predicted Secondary structure								.	.
Template SS confidence
		142	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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