Job Description P39304 Confidence 76.91% Date Thu Jan 5 11:59:08 GMT 2012 Rank 436 Aligned Residues 184 % Identity 16% Template c3fluD_ PDB info PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis Resolution 2.00 Å

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		14	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.							.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure														.										.	.	.	.	.	.																						.																		.	.
Query SS confidence														.										.	.	.	.	.	.																						.																		.	.
Query Sequence		T	M	D	S	A	Y	E	T	T	R	L	I	.	A	E	E	V	D	I	I	E	V	.	.	.	.	.	.	G	T	I	L	C	V	G	E	G	V	R	A	V	R	D	L	K	A	L	Y	P	.	H	K	I	V	L	A	D	A	K	I	A	D	A	G	K	I	L	.	.	S	R	M	C	F	E	A	N	A	D	W
Query Conservation														.										.	.	.	.	.	.																						.																		.	.
Alig confidence														.										.	.	.	.	.	.																						.																		.	.
Template Conservation
Template Sequence		H	Y	E	Q	L	R	D	L	I	D	W	H	I	E	N	G	T	D	G	I	V	A	V	G	T	T	G	E	S	A	T	L	S	V	E	E	H	T	A	V	I	E	A	V	V	K	H	V	A	K	R	V	P	V	I	A	G	T	G	A	N	N	T	V	E	A	I	A	L	S	Q	A	A	E	K	A	G	A	D	Y
Template Known Secondary structure																T	T							S	S	T	T	T	T	G	G	G	S																	T	T	S	S									S	S															T		S
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		84	.	.	.	.						.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.						.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure							.	.	.	.	.																													.	.	.	.	.
Query SS confidence							.	.	.	.	.																													.	.	.	.	.
Query Sequence		V	T	V	I	C	.	.	.	.	.	C	A	D	I	N	T	A	K	G	A	L	D	V	A	K	E	F	N	G	D	V	Q	I	E	L	T	G	Y	.	.	.	.	.	W	T	W	E	Q	A	Q	Q	W	R	D	A	G	I	G	Q	V	V	Y	H	R	S	R	D	A	Q	A	A	G	V	A	W	G	E	A	D	I
Query Conservation							.	.	.	.	.																													.	.	.	.	.
Alig confidence							.	.	.	.	.																													.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.
Template Sequence		T	L	S	V	V	P	Y	Y	N	K	P	S	Q	E	G	I	Y	Q	H	F	K	T	I	A	E	A	T	S	I	P	M	I	I	Y	N	V	P	G	R	T	V	V	S	M	T	N	D	T	I	L	R	L	A	E	I	P	N	I	V	G	V	K	E	A	S	G	N	.	.	.	.	.	.	.	.	.	I	G	S	N
Template Known Secondary structure									S	S																	T			S												S	S											T	T	S	T	T								S			.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.										.	.	.	170
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	I	K	R	L	S	D	M	G	F	K	V	T	V	T	G	G	L	A	L	E	D	L	P	L	F	K	G	I	P	I	H	V	F	I	A	G	R	S	I	R	D	A	A	S	P	V	E	A	A	R	Q	F	K	R	S	I	A
Query Conservation
Alig confidence																				.	.	.																						.	.	.
Template Conservation																				.	.	.																						.	.	.
Template Sequence		I	E	L	I	N	R	A	P	E	G	F	V	V	L	S	G	D	D	.	.	.	H	T	A	L	P	F	M	L	C	G	G	H	G	V	I	T	V	A	A	N	A	.	.	.	A	P	K	L	F	A	D	M	C	R	A	A	L	Q
Template Known Secondary structure								S		T	T								G	.	.	.	G	G							T	T							S	G	G	G	T	.	.	.
Template Predicted Secondary structure																				.	.	.																						.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions