Job Description P39304 Confidence 97.20% Date Thu Jan 5 11:59:08 GMT 2012 Rank 205 Aligned Residues 161 % Identity 19% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.																	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																			.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query SS confidence																			.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query Sequence		H	K	I	V	L	A	D	A	K	I	A	D	A	G	K	I	L	.	.	S	R	M	C	F	E	A	N	A	D	W	V	T	V	I	C	C	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	N	T	A	K	G	A	L	D	V	A	K	E	.	F	N	G	D	V	Q	I	E	L	T	G	Y
Query Conservation																			.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Alig confidence																			.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		E	H	P	I	A	L	Q	L	A	G	S	D	P	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	R	L	G
Template Known Secondary structure		G		S								S															T	T		S										S							T		G	G	G	G	G	G														T	T		S	S								S
Template Predicted Secondary structure
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		117	.									.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.					.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.																					.	.	.	.																								.	.
Query SS confidence				.	.	.	.	.	.	.	.																					.	.	.	.																								.	.
Query Sequence		W	T	.	.	.	.	.	.	.	.	W	E	Q	A	Q	Q	W	R	D	A	G	I	G	Q	V	V	Y	H	R	S	.	.	.	.	R	D	A	Q	A	A	G	V	A	W	G	E	A	D	I	T	A	I	K	R	L	S	D	.	.	M	G	F	K	V	T	V	T	G	G	L	A	L	E	D	L	P	L	F	K	G
Query Conservation				.	.	.	.	.	.	.	.																					.	.	.	.																								.	.
Alig confidence				.	.	.	.	.	.	.	.																					.	.	.	.																								.	.
Template Conservation
Template Sequence		L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L
Template Known Secondary structure		B	T	T																	T	T									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S			S
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.																		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	P	I	H	V	F	I	A	G	R	S	I	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	S	P	V	E	A	A	R	Q	F	K	R	S	I	A	E	L	W	G
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	R	V	D	G	V	X	L	G	R	A	V	Y	E	D	P	F	V	L	E	E	A	D	R	R	V	F	G	L	P	R	R	P	S	R	L	E	V	A	R	R	X	R	A	Y	L	E	E	E	V	L
Template Known Secondary structure		T	T	S	S					S							G	G	G	G	T	T					T	S			S																					T
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions