Job Description P39304 Confidence 98.15% Date Thu Jan 5 11:59:08 GMT 2012 Rank 144 Aligned Residues 167 % Identity 18% Template c2zyfA_ PDB info PDB header:transferase Chain: A: PDB Molecule:homocitrate synthase; PDBTitle: crystal structure of homocitrate synthase from thermus thermophilus2 complexed with magnesuim ion and alpha-ketoglutarate Resolution 2.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		14	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		T	M	D	S	A	Y	E	T	T	R	L	I	A	E	.	E	V	D	I	I	E	V	G	T	I	L	C	V	G	E	G	V	R	A	V	R	D	L	K	A	L	Y	P	H	K	I	V	L	A	D	A	K	I	A	D	A	G	K	I	L	S	R	M	C	F	E	A	N	A	D	W	V	T	V	I	C	C	A	D	I
Query Conservation																.
Alig confidence																.																																											.	.	.
Template Conservation																																																											.	.	.
Template Sequence		S	T	Q	D	K	V	E	I	A	K	A	L	D	E	F	G	I	E	Y	I	E	V	T	T	P	V	A	S	P	Q	S	R	K	D	A	E	V	L	A	S	L	G	L	K	A	K	V	V	T	H	I	Q	C	R	L	D	A	.	.	.	A	K	V	A	V	E	T	G	V	Q	G	I	D	L	L	F	G	T	S	K
Template Known Secondary structure																	T		S							G	G	G														S			S	S								S					.	.	.							T	T		S								S
Template Predicted Secondary structure																																																											.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
										93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120								.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	N	T	A	K	G	A	L	D	V	A	K	E	F	N	G	D	V	Q	I	E	L	T	G	Y	W	T	W	E	.	.	.	.	.	.	.	Q	A	Q	Q	W	R	D	A	G	I	G	Q	V	V	Y	H	R	S	R	D	A	Q	A	A	G	V	A	W	G	E	A	D	I	T	A	I	K
Query Conservation		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation																																																												.	.	.	.	.
Template Sequence		G	R	D	I	P	R	I	I	E	E	A	K	E	V	I	A	Y	I	R	E	A	A	P	H	V	E	V	R	F	S	A	E	D	T	F	R	S	E	E	Q	D	L	L	A	V	Y	E	A	V	A	P	Y	V	D	R	V	G	L	.	.	.	.	.	A	D	T	V	G	V	A	T	P	R	Q	V	Y	A	L	V	R
Template Known Secondary structure																								T	T	S							S	S	T	T	T	S													G	G	G		S					.	.	.	.	.			T	T	S
Template Predicted Secondary structure																																																												.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.						.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		158	.	160	.		.	.	.	.	.	.	.	.	170							.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure						.										.	.	.	.	.	.
Query SS confidence						.										.	.	.	.	.	.
Query Sequence		R	L	S	D	.	M	G	F	K	V	T	V	T	G	.	.	.	.	.	.	G	L	A	L	E	D	L	P	L	F	K	G	I	P	I	H	V	F
Query Conservation						.										.	.	.	.	.	.
Alig confidence						.										.	.	.	.	.	.
Template Conservation
Template Sequence		E	V	R	R	V	V	G	P	R	V	D	I	E	F	H	G	H	N	D	T	G	C	A	I	A	N	A	Y	E	A	I	E	A	G	A	T	H	V
Template Known Secondary structure								T	T	T	S							B		T	T	S												T	T
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions