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Job DescriptionP39304
Confidence98.39%DateThu Jan 5 11:59:08 GMT 2012
Rank131Aligned Residues168
% Identity15%Templatec2zrvC_
PDB info PDB header:isomeraseChain: C: PDB Molecule:isopentenyl-diphosphate delta-isomerase; PDBTitle: crystal structure of sulfolobus shibatae isopentenyl2 diphosphate isomerase in complex with reduced fmn.
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   45....50.........60..... ....70.........80.........90... ......100......
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Query Sequence  RAVRDLKALYPHKIVLADAKI. . . . . ADAGKILSRMCFEANADWVTVICCADIN. . . . . . . . . . . . . TAKGALDVAKEFN
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Template Sequence  ESFAIVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELS
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SSS
GGGGTTT

TT
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T
S
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   108.110.........120.........130.........140.........150.........160.........170.........180.......
 
   107..110...... ...120.........130.........140.. .......150.........160..
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Query Sequence  GDVQIELTGY. WTWEQAQQWRDAGIGQVVYHRSRDAQ. . . . . . . . . . . . . . . . . . . . . . . AAGVAWGEADITAIKRLSDM
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Template Sequence  VPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVP.
Template Known Secondary structure  S

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TT




BTSB
TT
TTTT
S
BST.
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   188.190.........200.........210.........220.........230.........240.........250.........260......
 
   163......170.. .......180.........190...... ...200.........210...
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Query Sequence  GFKVTVTGGL. ALEDLPLFKGIPIHVFIAGRSIRD. AASPVEAARQFKRSIAE
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Template Sequence  DSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAIEGKESLEQFFRKIIF
Template Known Secondary structure  T
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ST
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   267..270.........280.........290.........300.........310.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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