Job Description P39304 Confidence 74.08% Date Thu Jan 5 11:59:08 GMT 2012 Rank 458 Aligned Residues 188 % Identity 16% Template c2v9dB_ PDB info PDB header:lyase Chain: B: PDB Molecule:yage; PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12 Resolution 2.15 Å

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		14	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.							.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure														.										.	.	.	.	.	.																								.																.	.
Query SS confidence														.										.	.	.	.	.	.																								.																.	.
Query Sequence		T	M	D	S	A	Y	E	T	T	R	L	I	.	A	E	E	V	D	I	I	E	V	.	.	.	.	.	.	G	T	I	L	C	V	G	E	G	V	R	A	V	R	D	L	K	A	L	Y	P	H	K	.	I	V	L	A	D	A	K	I	A	D	A	G	K	I	L	.	.	S	R	M	C	F	E	A	N	A	D	W
Query Conservation														.										.	.	.	.	.	.																								.																.	.
Alig confidence														.										.	.	.	.	.	.																								.																.	.
Template Conservation
Template Sequence		D	K	P	G	T	A	A	L	I	D	D	L	I	K	A	G	V	D	G	L	F	F	L	G	S	G	G	E	F	S	Q	L	G	A	E	E	R	K	A	I	A	R	F	A	I	D	H	V	D	R	R	V	P	V	L	I	G	T	G	G	T	N	A	R	E	T	I	E	L	S	Q	H	A	Q	Q	A	G	A	D	G
Template Known Secondary structure																T	T		S					S	S	T	T	T	T	G	G	G	S																	T	T	S	S								S	S																T		S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		84	.	.	.	.						.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.						.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure							.	.	.	.	.																													.	.	.	.	.
Query SS confidence							.	.	.	.	.																													.	.	.	.	.
Query Sequence		V	T	V	I	C	.	.	.	.	.	C	A	D	I	N	T	A	K	G	A	L	D	V	A	K	E	F	N	G	D	V	Q	I	E	L	T	G	Y	.	.	.	.	.	W	T	W	E	Q	A	Q	Q	W	R	D	A	G	I	G	Q	V	V	Y	H	R	S	R	D	A	Q	A	A	G	V	A	W	G	E	A	D	I
Query Conservation							.	.	.	.	.																													.	.	.	.	.
Alig confidence							.	.	.	.	.																													.	.	.	.	.																									.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.
Template Sequence		I	V	V	I	N	P	Y	Y	W	K	V	S	E	A	N	L	I	R	Y	F	E	Q	V	A	D	S	V	T	L	P	V	X	L	Y	N	F	P	A	L	T	G	Q	D	L	T	P	A	L	V	K	T	L	A	D	S	R	S	N	I	I	G	I	K	D	T	I	D	.	.	.	.	.	.	.	S	V	A	H	L	R
Template Known Secondary structure								S	S	S																			S	S												S																T	T									S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.								.	180	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	I	K	R	L	S	D	M	G	F	K	V	T	V	T	G	G	L	A	L	E	D	L	P	L	F	K	G	I	P	I	H	V	F	I	A	G	R	S	I	R	D	A	A	S	P	V	E	A	A	R	Q	F	K	R	S	I	A
Query Conservation
Alig confidence																						.																						.	.	.
Template Conservation																						.																						.	.	.
Template Sequence		S	X	I	H	T	V	K	G	A	H	P	H	F	T	V	L	C	G	Y	D	.	D	H	L	F	N	T	L	L	L	G	G	D	G	A	I	S	A	S	G	N	F	.	.	.	A	P	Q	V	S	V	N	L	L	K	A	W	R	D
Template Known Secondary structure												T	T						S	S	G	.	G	G							T	T							G	G	G	T	T	.	.	.														T
Template Predicted Secondary structure																						.																						.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions