Job Description P39304 Confidence 83.64% Date Thu Jan 5 11:59:08 GMT 2012 Rank 396 Aligned Residues 88 % Identity 10% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	M	D	S	A	Y	E	T	T	R	L	I	A	E	E	V	D	I	I	E	V	G	T	I	L	C	V	G	E	G	V	R	A	V	R	D	L	K	A	L	Y	P	H	K	I	V	L	A	D	A	K	I	A	D	A	G	K	I	L	S	R	M	C	F	E	A	N	A	D	W	V	T	V	I	C	C	A	D	I
Query Conservation
Alig confidence																											.	.																																.	.
Template Conservation																											.	.																																.	.
Template Sequence		E	R	G	K	E	A	Y	K	L	L	S	E	K	H	F	N	V	V	L	L	D	L	L	L	P	.	.	D	V	N	G	L	E	I	L	K	W	I	K	E	R	S	P	E	T	E	V	I	V	I	T	G	H	G	T	I	K	T	.	.	A	V	E	A	M	K	M	G	A	Y	D	F	L	T	K	P	C	M	L	E
Template Known Secondary structure		S	S											S			S						S	B		S	.	.	S	S	B													T	T	S								T	T					.	.						T	T	T								S
Template Predicted Secondary structure																											.	.																																.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	A	K	G	A	L	D	V	A	K	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	E	L	T	I	N	K	A	I	E	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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