Job Description P75823 Confidence 99.86% Date Thu Jan 5 12:14:38 GMT 2012 Rank 230 Aligned Residues 304 % Identity 12% Template d2hoxa1 SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like Resolution 1.40

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.										.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.									.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Query Sequence		I	D	L	R	S	D	T	V	T	R	P	S	R	A	M	L	E	A	M	M	A	A	P	V	G	D	D	V	Y	G	.	.	.	.	.	.	.	.	.	D	D	P	T	V	N	A	L	Q	D	Y	A	A	E	L	S	.	.	.	.	.	.	.	.	G	K	E	A	A	I	F	L	P	T	G	T	Q	A	N	L	V
Query Conservation																																.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	V	A	S	G	D	G	L	F	L	E	E	Y	W	K	Q	H	K	E	A	S	A	V	L	V	S	P	W	H	R	M	S	Y	F	F	N	P	V	S	N	F	I	S	F	E	L	E	K	T	I	K	E	L	H	E	V	V	G	N	A	A	A	K	D	R	Y	I	V	F	G	V	G	V	T	Q	L	I	H	G
Template Known Secondary structure						S				G	G	G					T	T	S										T	T	T	T		S	S	S		S	S			T	T																	T		B			T	T							S
Template Predicted Secondary structure
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		65	.	.	.	.	70	.	.	.	.	.									.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.
Query Sequence		A	L	L	S	H	C	E	R	G	E	E	.	.	.	.	.	.	.	.	Y	I	V	G	Q	A	A	H	N	Y	L	F	E	A	G	G	A	A	V	L	G	S	I	Q	P	Q	P	I	D	A	A	A	D	G	T	L	P	L	D	K	V	A	M	K	I	K	P	D	D	I	H	F	A	R	T	K	L	L	S	L	E
Query Conservation													.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.													.	.	.	.
Template Sequence		L	V	I	S	L	S	P	N	M	T	A	T	P	D	A	P	E	S	K	V	V	A	H	A	P	F	Y	P	V	F	R	E	Q	T	K	Y	F	D	K	K	G	Y	V	W	A	G	.	.	.	.	.	.	.	.	.	N	A	A	N	Y	V	N	V	S	N	P	E	.	.	.	.	Q	Y	I	E	M	V	T	S	P
Template Known Secondary structure							S			T	T	T		T	T	S									S	S												S			T	T						.	.	.	.	.	.	.	.	.		G	G	G	G	T	T		S		G	G	.	.	.	.	G							S	S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.													.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.										.	.	.	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		N	T	H	N	G	K	V	L	P	R	E	Y	L	K	E	A	W	E	F	T	R	E	R	N	L	A	L	H	V	D	G	A	R	I	F	N	A	V	V	A	Y	G	C	E	L	K	E	I	T	Q	Y	C	D	S	F	T	I	C	L	S	K	G	L	G	T	P	V	G	S	L	.	L	V	G	N	R	D	Y	I	K
Query Conservation																																																																								.
Alig confidence											.	.	.	.	.	.	.	.	.	.																											.	.	.																							.
Template Conservation											.	.	.	.	.	.	.	.	.	.																											.	.	.
Template Sequence		N	N	P	E	G	L	L	R	H	.	.	.	.	.	.	.	.	.	.	A	V	I	K	G	C	K	S	I	Y	D	M	V	Y	Y	W	P	H	Y	T	P	I	K	Y	K	A	.	.	.	D	E	D	I	L	L	F	T	M	S	K	F	T	G	H	S	G	S	R	F	G	W	A	L	I	K	D	E	S	V	Y	N
Template Known Secondary structure			T	T	T						.	.	.	.	.	.	.	.	.	.		S	S	T	T								T	T		S	T	T	T	S				S		B	.	.	.			S										T	S		G	G	G
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.																											.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.											.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240				.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.														.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	I	R	W	R	K	M	T	G	G	G	M	R	Q	S	G	I	L	A	A	A	G	I	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	N	N	V	A	R	L	Q	E	D	H	D	N	A	A	W	M	A	E	Q	L	R	E	A	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	L	L	N	Y	M	T	K	N	T	E	G	T	P	R	E	T	Q	L	R	S	L	K	V	L	K	E	V	V	A	M	V	K	T	Q	K	G	T	M	R	D	L	N	T	F	G	F	K	K	L	R	E	R	W	V	N	I	T	A	L	L	D	Q	S	D	R	F	S	Y	Q	E	L	P	Q	S	E	Y	C	N	Y
Template Known Secondary structure											T	S	S																								T	T	S	T	T	S																					T	T	S	S	S								S					T	T
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
				269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.								.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure		.	.																																					.	.	.	.	.	.	.
Query SS confidence		.	.																																					.	.	.	.	.	.	.
Query Sequence		.	.	D	V	M	R	Q	D	T	N	M	L	F	V	R	V	G	E	E	N	A	A	A	L	G	E	Y	M	K	A	R	N	V	L	I	N	A	S	.	.	.	.	.	.	.	P	I	V	R	L	V	T	H	L	D	V	S	R	E	Q	L	A	E	V	A	A	H	W	R	A	F	L	A	R
Query Conservation		.	.																																					.	.	.	.	.	.	.
Alig confidence		.	.																																					.	.	.	.	.	.	.							.	.
Template Conservation																																																					.	.
Template Sequence		F	R	R	M	R	P	P	S	P	S	Y	A	W	V	K	C	E	W	E	E	D	K	D	C	Y	Q	T	F	Q	N	G	R	I	N	T	Q	N	G	V	G	F	E	A	S	S	R	Y	V	R	L	S	.	.	L	I	K	T	Q	D	D	F	D	Q	L	M	Y	Y	L	K	D	M	V	K	A
Template Known Secondary structure		T	T								S								S	G	G	G		S								T	T						G	G	G	G	T	S		T	T						.	.		S	S																	T
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.			.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions