230 d2hoxa1 Probab=99.86   E-value=3.9e-19  Score=139.05  Aligned_columns=304  Identities=12%

Q ss_pred             EECCCCCCCCCCHHHHHHHHHHHCCCCCCC---------CCHHHHHHHHHHHHHC--------CCCEEEEECCHHHHHHH
Q ss_conf             306678999999899999997415788567---------9988999999999970--------89879999998999999
Q batch____         2 IDLRSDTVTRPSRAMLEAMMAAPVGDDVYG---------DDPTVNALQDYAAELS--------GKEAAIFLPTGTQANLV   64 (333)
Q Consensus         2 ~~~~~~~~t~p~p~~~~A~~~a~~~~~~y~---------~~p~~~~l~~~la~~~--------g~e~~~~~~sGt~a~~~   64 (333)
                      +|+.++-++...|--++-......-.+.|+         ..|...+|++.+++++        ....+++++|+++++.+
T Consensus        59 ~~~~~gdp~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~  138 (425)
T d2hoxa1          59 ADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHG  138 (425)
T ss_dssp             EECCSCCCGGGHHHHTTSHHHHCCCCCTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHH
T ss_conf             34667885546366411421000112455545654566434452899999999988508867887769994688999999


Q ss_pred             HHHHHHCCCCE--------EEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             99997237989--------9952776603667689985259557656314776238688887323310024732999725
Q batch____        65 ALLSHCERGEE--------YIVGQAAHNYLFEAGGAAVLGSIQPQPIDAAADGTLPLDKVAMKIKPDDIHFARTKLLSLE  136 (333)
Q Consensus        65 al~a~~~~g~~--------vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (333)
                      ++.+++.|||.        +++..+.|+.+.............+..         |.+.++..+++.    .+..+++.+
T Consensus       139 a~~aL~~pGd~v~~~~p~~v~~~~p~y~~~~~~~~~~~~~~~~~~~---------d~~~~~~~~~~~----~~~~~i~~P  205 (425)
T d2hoxa1         139 LVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAG---------NAANYVNVSNPE----QYIEMVTSP  205 (425)
T ss_dssp             HHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCCTTEEEEE---------EGGGGTTCSCGG----GEEEEEESS
T ss_pred             HHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCC---------CHHHHHHHCCCC----CEEEEECCC
T ss_conf             9998648886123567743573002377899999855997444247---------988999724888----579998178


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC-CCCCHHHHH
Q ss_conf             7788861487781248999741898899930433131124676510002660265303554346552334-467689997
Q batch____       137 NTHNGKVLPREYLKEAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSL-LVGNRDYIK  215 (333)
Q Consensus       137 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  215 (333)
                      |||+|.+.+          +.++|+++|.|++|............   .....+.+.+|..++.+.+.++ ...+..+..
T Consensus       206 ~NPtG~v~~----------a~~~~~~~i~De~y~~~~~~~~~~~~---~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~  272 (425)
T d2hoxa1         206 NNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTPIKYKA---DEDILLFTMSKFTGHSGSRFGWALIKDESVYN  272 (425)
T ss_dssp             CTTTCCCCC----------CSSTTCEEEEECTTCSTTTSCCCSCB---CCSEEEEEHHHHTSCGGGCCEEEEECCHHHHH
T ss_pred             CCCCCEEEE----------EEECCCEEEEECCCCCCCCCCCCCCC---CCEEEEEECCCCCCCCCCCEEEEEECCHHHHH
T ss_conf             888560654----------23239689971432343323333456---85499981551012332310189968989999


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHH-------------HCCHHHHHHHHHHHHHHHHHHHHHCCC--------------
Q ss_conf             64410244556543048999999985-------------110278999998655322222321794--------------
Q batch____       216 RAIRWRKMTGGGMRQSGILAAAGIYA-------------LKNNVARLQEDHDNAAWMAEQLREAGA--------------  268 (333)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~a~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  268 (333)
                      .............+...+.++...+.             ............++...+...+...+.              
T Consensus       273 ~l~~~~~~~~~~~s~~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~  352 (425)
T d2hoxa1         273 NLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNY  352 (425)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETT
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             99986410577736899999999960201345655554899999999999999999999986357630034565543221


Q ss_pred             --EEECCCCCEEEEEECCCCHHHHHHHHHHCCCEEECC-------CEEEEECCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             --650688867999817989999999999789199129-------96999528889999999999999998549
Q batch____       269 --DVMRQDTNMLFVRVGEENAAALGEYMKARNVLINAS-------PIVRLVTHLDVSREQLAEVAAHWRAFLAR  333 (333)
Q Consensus       269 --~~~~~~~~~v~~~~~~~~~~~l~~~L~~~Gv~v~~~-------~~iR~~~~~~~t~edi~~~~~a~~~~l~r  333 (333)
                        .+.+..+.++|++++..+.+.+.+.|+++||.+++|       +++|++  +..++|+++++++.|++++..
T Consensus       353 ~~~~~~~~~~f~w~~~~~~~~~~~~~lL~e~GI~v~pGs~FG~~~~~vRiS--l~~~~e~ld~~l~rL~~~v~~  424 (425)
T d2hoxa1         353 FRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLS--LIKTQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             TTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEE--CSSCHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCEEEEE--ECCCHHHHHHHHHHHHHHHHC
T ss_conf             001377876169986789808999999996694997170238988659999--139989999999999998726