Job Description P29012 Confidence 100.00% Date Thu Jan 5 11:45:32 GMT 2012 Rank 30 Aligned Residues 311 % Identity 13% Template c1tufA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from m.2 jannaschi Resolution 2.40 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.								30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.																						.	.																								.
Query SS confidence																												.	.	.	.	.	.	.																						.	.																								.
Query Sequence		P	I	Q	A	S	L	D	L	Q	A	L	K	Q	N	L	S	I	V	R	Q	A	A	T	H	A	R	.	.	.	.	.	.	.	V	W	S	V	V	K	A	N	A	Y	G	H	G	I	E	R	I	W	S	A	I	.	.	G	A	T	D	G	F	A	L	L	N	L	E	E	A	I	T	L	R	E	R	G	W	K	.
Query Conservation																												.	.	.	.	.	.	.																						.	.																								.
Alig confidence						.																						.	.	.	.	.	.	.										.	.	.	.									.	.				.																				.
Template Conservation						.																																						.	.	.	.														.
Template Sequence		P	L	Y	V	.	M	S	E	E	Q	I	K	I	N	Y	N	R	Y	I	E	A	F	K	R	W	E	E	E	T	G	K	E	F	I	V	A	Y	A	Y	A	N	A	.	.	.	.	N	L	A	I	T	R	L	L	A	K	L	G	C	.	G	A	D	V	V	S	G	G	E	L	Y	I	A	K	L	S	N	V	P	S
Template Known Secondary structure		S				.																		T	T					S														.	.	.	.											T	T		.						S										T	T			G
Template Predicted Secondary structure						.																																						.	.	.	.														.
Template SS confidence
		45	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.					.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.															.	130	.	.	.	.	.	.
Predicted Secondary structure																									.																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	P	I	L	M	L	E	G	F	F	H	A	Q	D	L	E	I	Y	D	Q	H	R	L	.	T	T	C	V	H	S	N	W	Q	L	K	A	L	Q	N	A	R	L	.	.	K	A	P	L	D	I	Y	L	K	V	N	S	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	L	G	F	Q	P	D
Query Conservation																									.																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.																			.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	K	I	V	F	N	G	N	C	K	T	K	E	E	I	I	M	G	I	E	A	N	I	R	A	F	N	V	D	S	I	S	E	L	I	L	I	N	E	T	A	K	E	L	G	E	T	A	N	V	A	F	R	I	N	P	N	V	N	P	K	T	H	P	K	I	S	T	G	L	K	K	N	K	F	G	L	D	V	E
Template Known Secondary structure		G	G						S													T	T		S																					T								B							T	T	T	S										S	S		S			T	T
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		137			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure			.	.																											.																					.	.	.
Query SS confidence			.	.																											.																					.	.	.
Query Sequence		R	.	.	V	L	T	V	W	Q	Q	L	R	A	M	A	N	V	G	E	M	T	L	M	S	H	F	A	E	A	.	E	H	P	D	G	I	S	G	A	M	A	R	I	E	Q	A	A	E	G	L	.	.	.	E	C	R	R	S	L	S	N	S	A	A	T	L	W	H	P	E	A	H	F	D	W	V	R	P	G	I
Query Conservation			.	.																											.																					.	.	.
Alig confidence			.	.																											.																					.	.	.																				.
Template Conservation																																																																										.
Template Sequence		S	G	I	A	M	K	A	I	K	M	A	L	E	M	E	Y	V	N	V	V	G	V	H	C	H	I	G	S	Q	L	T	D	I	S	P	F	I	E	E	T	R	K	V	M	D	F	V	V	E	L	K	E	E	G	I	E	I	E	D	V	N	L	G	G	G	L	G	I	P	Y	Y	K	.	D	K	Q	I	P	T	Q
Template Known Secondary structure		T	T											T		S	S												S	S	B																						T	T	T				S								B					S	S	.	S	S
Template Predicted Secondary structure																																																																										.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	Y	G	A	S	P	S	G	Q	W	R	D	I	A	N	T	G	L	R	P	V	M	T	L	S	S	E	I	I	G	V	Q	T	L	K	A	G	E	R	V	G	Y	G	G	R	Y	T	A	R	D	E	Q	R	I	G	I	V	A	A	G	Y	A	D	G	Y	P	R	H	A	P	T	G	T	P	V	L	V	D	G
Query Conservation
Alig confidence																			.	.
Template Conservation																			.	.
Template Sequence		K	D	L	A	D	A	I	I	N	T	M	L	K	Y	K	D	K	.	.	V	E	M	P	N	L	I	L	E	P	G	R	S	L	V	A	T	A	G	Y	L	L	G	K	V	H	H	I	K	E	T	P	V	T	K	W	V	M	I	D	A	G	M	N	D	M	M	R	P	A	M	Y	E	A	Y	H	H	I	I	N	C
Template Known Secondary structure														T	T	T	T	T	.	.	S										S					G	G	G														S	S							S			T	T	T																S
Template Predicted Secondary structure																			.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
								291	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.												.	.
Query SS confidence		.	.	.	.	.	.												.	.
Query Sequence		.	.	.	.	.	.	V	R	T	M	T	V	G	T	V	S	M	.	.	D	M	L	A	V	D	L	T	P	C	P	Q	A	G	I	G	T	P	V	E	L	W	G
Query Conservation		.	.	.	.	.	.												.	.
Alig confidence		.	.	.	.	.	.												.	.									.
Template Conservation																													.
Template Sequence		K	V	K	N	E	K	E	V	V	S	I	A	G	G	L	C	E	S	S	D	V	F	G	R	D	R	E	.	L	D	K	V	E	V	G	D	V	L	A	I	F	D
Template Known Secondary structure		B			S										S	S	S		T	T									.						T	T
Template Predicted Secondary structure																													.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions