Job Description P63284 Confidence 99.83% Date Thu Jan 5 12:08:03 GMT 2012 Rank 34 Aligned Residues 205 % Identity 19% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.		.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		R	M	E	Q	E	L	H	H	R	V	I	G	Q	N	E	A	V	D	A	V	S	N	A	I	R	R	S	R	A	G	L	A	D	P	N	.	R	P	I	G	S	F	L	F	L	G	P	T	G	V	G	K	T	E	L	C	K	A	L	A	N	F	M	F	D	S	D	E	A	M	V	R	I	D	M	S	E	F	M	E
Query Conservation																																					.
Alig confidence																																					.																												.	.	.
Template Conservation																																																																	.	.	.
Template Sequence		D	Y	A	S	Y	I	M	N	G	I	I	K	W	G	D	P	V	T	R	V	L	D	D	G	E	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	.	.	.	N	F	P	F	I	K	I	C	S	P	D	K	M	I
Template Known Secondary structure			T	T	T	T		T	T						S																					S	S		S									S	T	T	S	S													.	.	.			S							G	G	G	S	T
Template Predicted Secondary structure																																																																	.	.	.
Template SS confidence
		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560				.	.	.	.	.	.	.	.	.	570	.	.	.	.
		640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680											.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.
Query Sequence		K	H	S	V	S	R	L	V	G	A	P	P	G	Y	V	G	Y	E	E	G	G	Y	L	T	E	A	V	R	R	R	P	Y	S	V	I	L	L	D	E	V	E	.	.	.	.	.	.	.	.	.	.	K	A	H	P	D	V	F	N	I	L	L	Q	V	L	D	D	G	R	L	T	D	G	Q	G	R	T	V	D	F
Query Conservation																																											.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.
Template Sequence		G	F	S	E	T	A	K	C	Q	A	M	.	.	.	.	.	.	.	.	.	K	K	I	F	D	D	A	Y	K	S	Q	L	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	K	.	.	.	.	.	.	.	.	A	P	P	Q	G
Template Known Secondary structure		T											.	.	.	.	.	.	.	.	.									T	S	S													T	T		B	T	T	T	T	B													T	T		.	.	.	.	.	.	.	.			S	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.
Template SS confidence
		575	.	.	.	.	580	.	.	.	.	.										.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.									.	.	.	.	.
		710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	T	V	V	I	M	T	S	N	L	G	S	D	L	I	Q	E	R	F	G	E	L	D	Y	A	H	M	K	E	L	V	L	G	V	V	S	H	N	F	R	P	E	F	I	N	R	I	D	E	V	V	V	F	H	P	L	G	E	Q	H	I	A	S	I	A	Q	I	Q	L	K	R	L	Y	K	R	L	E	E	R
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Template Sequence		R	K	L	L	I	I	G	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	K	D	V	L	Q	E	M	E	.	.	.	.	.	.	.	M	L	N	A	F	S	T	T	I	H	V	P	N	I	A	T	G	E	Q	L	L	E	A	L	E	L	L	G	N	.	.	.	.	.	.	.	.
Template Known Secondary structure											S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	.	.	.	.	.	.	.	G	G	G	T	S	S																						T		.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Template SS confidence
		638	.	640	.	.	.	.	.	.	.																		.	.	650	.	.	.	.	.	.								.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.
		790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.			.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		G	Y	E	I	H	I	S	D	E	A	L	K	L	L	S	E	.	.	N	G	Y	D	P	V	Y	G	A	R	P	L	K	R	A	I	Q
Query Conservation																		.	.
Alig confidence		.	.	.	.	.												.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	F	K	D	K	E	R	T	T	I	A	Q	Q	V	K	G	K	K	V	W	I	G	I	K	K	L	L	M	L	I	E
Template Known Secondary structure		.	.	.	.	.	S													T	T	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							686	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions