Job Description P77495 Confidence 100.00% Date Thu Jan 5 12:29:54 GMT 2012 Rank 31 Aligned Residues 343 % Identity 15% Template c3qovD_ PDB info PDB header:ligase Chain: D: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of a hypothetical acyl-coa ligase (bt_0428) from2 bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution Resolution 2.20 Å

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		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		P	V	A	W	L	E	S	N	E	T	S	C	I	L	Y	T	S	G	T	T	G	K	P	K	G	V	Q	R	D	V	G	G	Y	A	V	A	L	A	T	S	M	D	T	I	F	.	.	G	G	K	A	G	S	V	F	F	C	A	S	D	I	G	W	V	V	G	H	S	Y	I	V	Y	A	P	L	L	A	G	M	A
Query Conservation																																															.	.
Alig confidence																																															.	.
Template Conservation
Template Sequence		N	Y	P	F	G	L	V	A	G	D	X	K	R	D	G	V	R	I	H	S	S	N	P	T	V	I	V	H	S	Q	H	D	L	D	S	W	A	N	L	V	A	R	C	L	Y	X	V	G	I	R	K	T	D	V	F	Q	N	S	S	G	Y	G	X	F	T	G	G	L	G	F	Q	Y	G	A	E	R	L	G	C	L
Template Known Secondary structure		T	T	T	T	T	T			S																																						T	T			T	T	S						S			T	T															T
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	V	Y	E	G	L	P	T	W	P	D	C	G	V	W	W	T	I	V	E	K	Y	Q	V	S	R	M	F	S	A	P	T	A	I	R	V	L	K	K	F	P	T	A	E	I	R	K	H	D	L	S	S	L	E	V	L	Y	L	A	G	E	P	L	D	E	P	T	A	S	W	V	S	N	T	L	D	V	P	V
Query Conservation
Alig confidence									.	.	.	.
Template Conservation									.	.	.	.
Template Sequence		T	V	P	A	A	A	G	.	.	.	.	N	S	K	R	Q	I	K	F	I	S	D	F	K	T	T	A	L	H	A	I	P	S	Y	A	I	R	L	A	E	V	F	Q	E	E	G	I	D	P	R	E	T	T	L	K	T	L	V	I	G	A	E	P	H	T	D	E	Q	R	R	K	I	E	R	X	L	N	V	K	A
Template Known Secondary structure							S		.	.	.	.													T																					T	T			T	T	S	S	S								S	S															T	S
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	N	Y	W	Q	T	E	S	G	W	P	I	M	A	I	A	R	G	L	D	D	R	P	T	R	L	G	S	P	G	V	P	M	Y	G	Y	N	V	Q	L	L	N	E	V	T	G	E	P	C	G	V	N	E	K	G	M	L	V	V	E	G	P	L	P	P	G	C	I	Q	T	I	W	G	D	D	G	R	F	V
Query Conservation
Alig confidence																					.	.	.	.	.	.																																								.	.	.													.
Template Conservation																					.	.	.	.	.	.																																								.	.	.													.
Template Sequence		Y	N	S	F	G	X	T	E	X	N	G	P	G	V	A	F	E	C	Q	.	.	.	.	.	.	E	Q	N	G	X	H	F	W	E	D	C	Y	L	V	E	I	I	D	P	E	T	G	E	P	V	P	E	G	E	I	G	E	L	V	L	T	T	L	D	.	.	.	R	E	X	X	P	L	I	R	Y	R	T	R	.
Template Known Secondary structure								G	G	G	T									T	.	.	.	.	.	.	T		S	S					T	T	T								T	T	T		S	B		S	T	T										S	S	.	.	.			S	S				S					.
Template Predicted Secondary structure																					.	.	.	.	.	.																																								.	.	.													.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.							.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.				.	.	.	.	.	.	.	.	300	.	.	.
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	Y	W	S	L	F	S	R	P	V	Y	A	T	F	D	W	G	I	R	D	A	D	G	Y	H	F	I	L	G	R	T	D	D	V	I	N	V	A	G	H	R	L	G	T	R	E	I	E	E	S	I	S	S	H	P	G	V	A	E	V	A	V	V	G	V	K	D	A	L	K	G	Q	V	A	V	A	F	V	I
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	D	L	T	R	I	L	P	G	K	C	P	C	G	R	T	H	L	R	I	D	R	I	K	G	R	S	D	D	X	F	I	I	K	G	V	N	I	F	P	X	Q	V	E	K	I	L	V	Q	F	P	E	L	G	S	N	Y	L	I	T	L	E	T	N	Q	D	E	X	I	V	E	V	E	L	S
Template Known Secondary structure		.	.	.	.	.	.								S			T	T				S										S	T	T					T	T													T	T		T	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.		.	.	.	.	.	580	.	.	.			.	.	.	.	.	.	590	.	.	.	.	.
Predicted Secondary structure																																		.										.	.
Query SS confidence																																		.										.	.
Query Sequence		P	K	E	S	D	S	L	E	D	R	D	V	A	H	S	Q	E	K	A	I	M	A	L	V	D	S	Q	I	G	N	F	G	.	R	P	A	H	V	W	F	V	S	.	.	Q	L	P	K	T	R	S	G	K	M	L	R
Query Conservation																																		.										.	.
Alig confidence								.	.	.	.	.	.	.																				.										.	.						.
Template Conservation								.	.	.	.	.	.	.																																					.
Template Sequence		D	L	S	T	D	N	.	.	.	.	.	.	.	Y	I	E	L	E	K	I	R	R	D	I	I	R	Q	L	K	D	E	I	L	V	T	P	K	V	K	L	V	K	K	G	S	L	P	Q	S	.	E	G	K	A	V	R
Template Known Secondary structure		S	S					.	.	.	.	.	.	.																				S	S									T	T		S				.	S	S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.																																					.
Template SS confidence
		380	.	.	.	.	.								.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.		.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions