Job Description P77495 Confidence 100.00% Date Thu Jan 5 12:29:54 GMT 2012 Rank 24 Aligned Residues 456 % Identity 21% Template c3nyrA_ PDB info PDB header:ligase Chain: A: PDB Molecule:malonyl-coa ligase; PDBTitle: malonyl-coa ligase ternary product complex with malonyl-coa and amp2 bound Resolution 1.45 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	I	D	R	W	L	E	K	Q	P	E	A	L	A	L	I	A	V	S	S	E	T	E	E	E	R	T	F	T	F	R	Q	L	H	D	E	V	N	A	V	A	S	M	L	R	S	L	G	V	Q	R	G	D	R	V	L	V	Y	M	P	M	I	A	E	A	H	I	T	L	L	A	C	A	R	I	G	A	I	H
Query Conservation
Alig confidence																			.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Sequence		A	L	S	P	A	P	T	G	A	P	A	D	R	P	A	L	R	.	.	.	.	.	.	F	G	E	R	S	L	T	Y	A	E	L	A	A	A	A	G	A	T	A	G	R	I	.	.	.	.	.	.	.	.	G	R	V	A	V	W	A	T	P	A	M	E	T	G	V	A	V	V	A	A	L	L	A	G	V	A	A
Template Known Secondary structure		T	T	S	S								T	S					.	.	.	.	.	.		T	T																		T		.	.	.	.	.	.	.	.									S	S														T
Template Predicted Secondary structure																			.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.							.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.									.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	V	F	G	G	F	A	S	H	S	V	A	A	R	I	D	D	A	K	P	V	L	I	V	S	A	D	A	G	A	R	G	G	K	I	I	P	Y	K	K	L	L	D	D	A	I	S	Q	A	Q	H	Q	P	R	H	V	L	L	V	D	R	G	L	A	K	M	A	R	V	S	G	R	D	V	D	F	A	S	L
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	P	L	N	P	K	S	G	D	K	E	L	A	H	I	L	S	D	S	A	P	S	L	V	L	A	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	E	L	P	P	A	L	G	A	L	E	R	V	D
Template Known Secondary structure						T	T																S						T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T					G	G	G	T	T	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.																																						.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	Q	H	I	G	A	R	V	P	V	A	W	L	E	S	N	E	T	S	C	I	L	Y	T	S	G	T	T	G	K	P	K	G	V	Q	R	D	V	G	G	Y	A	V	A	L	A	T	S	M	D	T	I	F	G	G	K	A	G	S	V	F	F	C	A	S	D	I	G	W	V	V	G	H	S	Y	I	V	Y	A
Query Conservation
Alig confidence																																																							.
Template Conservation																																																							.
Template Sequence		V	D	V	R	A	R	G	A	V	P	E	D	G	A	D	D	G	D	P	A	L	V	V	Y	T	S	G	T	T	G	P	P	K	G	A	V	I	P	R	R	A	L	A	T	T	L	D	A	L	A	D	A	W	.	Q	W	T	G	E	D	V	L	V	Q	G	L	P	L	F	H	V	H	G	L	V	L	G	I	L	G
Template Known Secondary structure				T	T												T	T	S										S	S	S	S																							.	T			T	T									T	T	S					T	T	T	T
Template Predicted Secondary structure																																																							.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	L	A	G	M	A	T	I	V	Y	E	G	L	P	T	W	P	D	C	G	V	W	W	T	I	V	E	K	Y	Q	V	S	R	M	F	S	A	P	T	A	I	R	V	L	K	K	F	P	T	A	E	I	R	K	H	D	L	S	S	L	E	V	L	Y	L	A	G	E	P	L	D	E	P	T	A	S	W	V	S
Query Conservation
Alig confidence																.	.	.	.
Template Conservation																.	.	.	.
Template Sequence		P	L	R	R	G	G	S	V	R	H	L	G	R	F	.	.	.	.	S	T	E	G	A	A	R	E	L	N	D	G	A	T	M	L	F	G	V	P	T	M	Y	H	R	I	A	E	T	L	P	A	D	P	E	L	A	K	A	L	A	G	A	R	L	L	V	S	G	S	A	A	L	P	V	H	D	H	E	R	I	A
Template Known Secondary structure						T							S	S		.	.	.	.										T	T	T																		G	G	G												S						S	S
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.					.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	L	D	V	P	V	I	D	N	Y	W	Q	T	E	S	G	W	P	I	M	A	I	A	R	G	L	D	D	R	P	T	R	L	G	S	P	G	V	P	M	Y	G	Y	N	V	Q	L	L	N	E	V	T	G	E	P	C	G	V	N	E	K	G	M	L	V	V	E	G	P	L	P	P	G	C	I	Q	T	I	W
Query Conservation
Alig confidence																								.	.	.	.																												.	.	.																.	.	.
Template Conservation																								.	.	.	.																												.	.	.																.	.	.
Template Sequence		A	A	T	G	R	R	V	I	E	R	Y	G	M	T	E	T	L	M	N	T	S	V	.	.	.	.	R	A	D	G	E	P	R	A	G	T	V	G	V	P	L	P	G	V	E	L	R	L	V	P	I	A	A	.	.	.	L	D	G	E	S	V	G	E	I	Q	V	R	G	P	N	.	.	.	L	F	T	E	Y	L
Template Known Secondary structure					S										G	G	G							.	.	.	.		T	T	S				T	T							T	T											.	.	.			S										S	T	T	.	.	.	S					T
Template Predicted Secondary structure																								.	.	.	.																												.	.	.																.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.					.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.				.	.	.	.	.	.	.	330	.	.	.	.	.	.	.				.	.	340	.	.	.
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.		.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		G	D	D	G	R	F	V	K	T	Y	W	S	L	F	S	R	P	V	Y	A	T	F	D	W	G	I	R	D	A	D	G	Y	H	F	I	L	G	R	T	.	D	D	V	I	N	V	A	G	H	R	L	G	T	R	E	I	E	E	S	I	S	S	H	P	G	V	A	E	V	A	V	V	G	V	K	D	A	L	K	G
Query Conservation																																									.
Alig confidence												.	.	.																											.
Template Conservation												.	.	.
Template Sequence		N	R	P	D	A	T	A	A	A	F	.	.	.	T	E	D	G	F	F	R	T	G	D	M	A	V	R	D	P	D	G	Y	V	R	I	V	G	R	K	A	T	D	L	I	K	S	G	G	Y	K	I	G	A	G	E	I	E	N	A	L	L	E	H	P	E	V	R	E	A	A	V	T	G	E	P	D	P	D	L	G
Template Known Secondary structure		T								T	B	.	.	.		T	T	S												T	T	S								S	S							T	T													T	T	S	T	T												T	T	T
Template Predicted Secondary structure												.	.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.				.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	A	V	A	F	V	I	P	K	E	S	D	S	L	E	D	R	D	V	A	H	S	Q	E	K	A	I	M	A	L	V	D	S	Q	I	G	N	F	G	R	P	A	H	V	W	F	V	S	Q	L	P	K
Query Conservation
Alig confidence																			.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.
Template Sequence		E	R	I	V	A	W	I	V	P	A	D	P	A	A	P	P	A	.	.	.	.	.	.	.	L	G	T	L	A	D	H	V	A	A	R	L	A	P	H	K	R	P	R	V	V	R	Y	L	D	A	V	P	R
Template Known Secondary structure											S	S	T	T	S				.	.	.	.	.	.	.												T		G	G	G	S		S						S
Template Predicted Secondary structure																			.	.	.	.	.	.	.
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.								.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.