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Job DescriptionP77495
Confidence100.00%DateThu Jan 5 12:29:54 GMT 2012
Rank10Aligned Residues504
% Identity24%Templatec3ni2A_
PDB info PDB header:ligaseChain: A: PDB Molecule:4-coumarate:coa ligase; PDBTitle: crystal structures and enzymatic mechanisms of a populus tomentosa 4-2 coumarate:coa ligase
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   53......60.........70.........80.........90.........100.........110.........120.........130..
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Query Sequence  LCHNAIDRWLEKQPEALALIAVSSETEEERTFTFRQLHDEVNAVASMLRSLGVQRGDRVLVYMPMIAEAHITLLACARIG
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Template Conservation 

   
   
   

  

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Template Sequence  PLHSYVLENLSNHSSKPCLIN. . . . GANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRG
Template Known Secondary structure 
TTTGGGSTTS....TTT

TT

TT


SST
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   23......30.........40... ......50.........60.........70.........80.........90........
 
   133......140.........150.........160.........170.........180.........190.........200.........210..
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Query Sequence  AIHSVVFGGFASHSVAARIDDAKPVLIVSADAGARGGKIIPYKKLLDDAISQAQHQPRHVLLVDRGLAKMARVSGRDVDF
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Template Conservation     
 
        
   
       
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Template Sequence  AIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD. . . . . . . . . . . . . . . . . . . . VKVMCVDSAPDGCLH
Template Known Secondary structure 


TT

T
GGGTT....................
SS


TT
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   99100.........110.........120.........130.........140... ......150........
 
   213......220.........230.........240.........250.........260...... ...270.........280.........
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Query Sequence  ASLRHQHIGARVPVAWLESNETSCILYTSGTTGKPKGVQRDVGGYAVALATSMD. . . TIFGGKAGSVFFCASDIGWVVGH
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Template Conservation                             
   
  
  
                                          
Template Sequence  FSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYAL
Template Known Secondary structure  TTS
GGG






TTS


TTSSS

SSS
SS


TT


S
TTS
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   159160.........170.........180.........190.........200.........210.........220.........230........
 
   290.........300.........310.........320.........330.........340.........350.........360.........
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Query Sequence  SYIVYAPLLAGMATIVYEGLPTWPDCGVWWTIVEKYQVSRMFSAPTAIRVLKKFPTAEIRKHDLSSLEVLYLAGEPLDEP
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Template Sequence  NSIMLCGLRVGAPILI. . . . MPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP. . DLDKHDLSSLRMIKSGGAPLGKE
Template Known Secondary structure  TT

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SS

T


T
S..
GGGS

TT

SS


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   239240.........250.... .....260.........270.........280......... 290.........300.........310..
 
   370........ .380.........390......... 400.........410.........420.........430.........440.......
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Query Sequence  TASWVSNTL. DVPVIDNYWQTESGWPIMAIA. RGLDDRPTRLGSPGVPMYGYNVQLLNEVTGEPCGVNEKGMLVVEGPLP
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Template Sequence  LEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQ.
Template Known Secondary structure 
TTS
GGGSS
GGGSSS




TT



SS

TTT

B

TT

STT.
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   313......320.........330.........340.........350.........360.........370.........380.........390.
 
   448.450.........460.........470.........480.........490.........500.........510.........520.......
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Query Sequence  PGCIQTIWGDDGRFVKTYWSLFSRPVYATFDWGIRDADGYHFILGRTDDVINVAGHRLGTREIEESISSHPGVAEVAVVG
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Template Sequence  . . IMKGYLNDPEATSRTI. . . DKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVG
Template Known Secondary structure  ..S
STT
B...
TTS

TTS

S

TT
TSTT
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   392.......400....... ..410.........420.........430.........440.........450.........460......
 
   528.530.........540.........550.........560.........570.........580.........590.........600
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Query Sequence  VKDALKGQVAVAFVIPKESDSLEDRDVAHSQEKAIMALVDSQIGNFGRPAHVWFVSQLPKTRSGKMLRRTIQA
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Template Sequence  LKDEDAGEVPVAFVVKSEKSQAT. . . . . . . . EDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKE
Template Known Secondary structure  TTT
TT



........TTS
GGG

S
S


B
TTS
B
T
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   467..470.........480......... 490.........500.........510.........520.........530.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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