Job Description P77495 Confidence 100.00% Date Thu Jan 5 12:29:54 GMT 2012 Rank 21 Aligned Residues 486 % Identity 21% Template c3g7sA_ PDB info PDB header:ligase Chain: A: PDB Molecule:long-chain-fatty-acid--coa ligase (fadd-1); PDBTitle: crystal structure of a long-chain-fatty-acid-coa ligase2 (fadd1) from archaeoglobus fulgidus Resolution 2.15 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		L	D	H	S	N	P	P	F	A	R	W	F	C	E	G	R	T	N	L	C	H	N	A	I	D	R	W	L	E	K	Q	P	E	A	L	A	L	I	A	V	S	S	E	T	.	.	E	E	E	R	T	F	T	F	R	Q	L	H	D	E	V	N	A	V	A	S	M	L	R	S	L	G	V	Q	R	G	D	R	V	L
Query Conservation																																														.	.
Alig confidence																			.	.	.																									.	.
Template Conservation																			.	.	.
Template Sequence		L	K	Y	K	I	G	F	P	S	L	Y	Y	P	K	I	S	L	.	.	.	A	D	R	I	D	A	A	A	E	K	F	G	E	K	T	A	I	I	S	A	E	P	K	F	P	S	E	F	P	E	S	X	N	F	L	E	I	C	E	V	T	K	K	L	A	S	G	I	S	R	K	G	V	R	K	G	E	H	V	G
Template Known Secondary structure			S	S														T	.	.	.	T											T	T	S							S	S					S	S		S																					T	T			T	T
Template Predicted Secondary structure																			.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.				20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	M	P	M	I	A	E	A	H	I	T	L	L	A	C	A	R	I	G	A	I	H	S	V	V	F	G	G	F	A	S	H	S	V	A	A	R	I	D	D	A	K	P	V	L	I	V	S	A	D	A	G	A	R	G	G	K	I	I	P	Y	K	K	L	L	D	D	A	I	S	Q	A	Q	H	Q	P	R	H	V
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.
Template Sequence		V	C	I	P	N	S	I	D	Y	V	X	T	I	Y	A	L	W	R	V	A	A	T	P	V	P	I	N	P	X	Y	K	S	F	E	L	E	H	I	L	N	D	S	E	A	T	T	L	V	V	H	.	.	.	.	.	.	.	.	.	S	X	L	Y	E	N	F	K	P	V	L	E	K	T	G	V	E	R	V	F	V
Template Known Secondary structure						S	S													T	T								T	T													T	T		S						.	.	.	.	.	.	.	.	.	G	G	G									T	T	S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.										130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	V	D	R	G	L	A	K	M	A	R	V	S	G	R	D	V	D	F	A	S	L	R	H	Q	H	I	G	A	R	V	P	V	A	W	L	E	S	N	E	T	S	C	I	L	Y	T	S	G	T	T	G	K	P	K	G	V	Q	R	D	V	G	G	Y	A	V	A	L	A	T	S	M	D	T	I	F	G	G	K
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.																																																															.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.																																																															.	.
Template Sequence		V	.	.	.	.	.	.	.	.	.	.	.	.	G	G	E	V	N	S	L	S	E	V	X	D	S	G	S	E	D	F	E	N	V	K	V	N	P	E	E	D	V	A	L	I	P	Y	T	G	G	T	T	G	P	K	G	V	X	L	T	H	F	N	L	A	A	N	A	L	Q	L	A	V	A	T	.	.	G	L	S
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	T		S	S	S									S		S									T	T	T	S																																			.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.																																																															.	.
Template SS confidence
		151													.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	S	V	F	F	C	A	S	D	I	G	W	V	V	G	H	S	Y	I	V	Y	A	P	L	L	A	G	M	A	T	I	V	Y	E	G	L	P	T	W	P	D	C	G	V	W	W	T	I	V	E	K	Y	Q	V	S	R	M	F	S	A	P	T	A	I	R	V	L	K	K	F	P	T	A	E	I	R	K	H	D
Query Conservation
Alig confidence																			.																		.	.	.	.
Template Conservation																			.																		.	.	.	.
Template Sequence		H	X	D	T	I	V	G	C	X	P	X	F	H	S	A	E	F	.	G	L	V	N	L	X	V	T	V	G	N	E	Y	V	V	X	G	.	.	.	.	X	F	N	Q	E	X	L	A	E	N	I	E	K	Y	K	G	T	F	S	W	A	V	P	P	A	L	N	V	L	V	N	T	L	E	S	S	N	K	T	Y	D
Template Known Secondary structure		T	T							S		T	T	S					.				T	T												S	.	.	.	.	S													T	T																					S
Template Predicted Secondary structure																			.																		.	.	.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.								.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.
Query Sequence		L	S	S	L	E	V	L	Y	L	A	G	E	P	L	D	E	P	T	A	S	W	V	S	N	T	L	.	.	.	.	.	.	.	D	V	P	V	I	D	N	Y	W	Q	T	E	S	G	W	P	I	M	A	I	A	R	G	L	D	D	R	P	T	R	L	G	S	P	G	V	P	M	Y	G	Y	N	V	Q	L	L	N
Query Conservation																												.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.																							.	.	.
Template Conservation																																																									.	.	.
Template Sequence		W	S	Y	L	K	V	F	A	T	G	A	W	P	V	A	P	A	L	V	E	K	L	L	K	L	A	A	E	K	C	N	N	P	R	L	R	H	N	Q	I	W	G	X	T	E	A	C	P	X	V	T	T	N	P	P	.	.	.	L	R	L	D	K	S	T	T	Q	G	V	P	X	S	D	I	E	L	K	V	I	S
Template Known Secondary structure			T	T								S	S																		S	S		T	T										G	G	G	S	S							G	.	.	.	G	G	G	G	G	T	T	S						T	T
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.				.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.		.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		E	V	T	G	E	P	C	G	V	N	E	K	G	M	L	V	V	E	G	P	L	P	P	G	C	I	Q	T	I	W	G	D	D	G	R	F	V	K	T	Y	W	S	L	.	F	S	R	P	V	Y	A	T	F	D	W	G	I	R	D	A	D	G	Y	H	F	I	L	G	R	T	D	D	V	I	N	V	A	G	H	R
Query Conservation																																													.
Alig confidence																							.	.	.																				.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.																																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	D	G	R	E	L	G	V	G	E	S	G	E	I	V	I	R	G	P	N	.	.	.	I	F	K	G	Y	W	K	R	E	K	E	N	Q	E	C	W	W	Y	D	E	K	G	R	K	F	F	R	T	G	D	V	G	F	I	D	E	E	G	F	L	H	F	Q	D	R	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S	S						T	T									S	T	T	.	.	.	S		S			T	T		T	T	G	G	G	T	S					T	T															T	T	S								.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.																																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390				.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	T	R	E	I	E	E	S	I	S	S	H	P	G	V	A	E	V	A	V	V	G	V	K	D	A	L	K	G	Q	V	A	V	A	F	V	I	P	K	E	S	D	S	L	E	D	R	D	V	A	H	S	Q	E	K	A	I	M	A	L	V	D	S	Q	I	G	N	F	G	R	P	A	H	V	W	F	V	S	Q
Query Conservation
Alig confidence		.																											.	.	.	.	.	.														.	.	.	.	.	.															.	.	.	.	.
Template Conservation		.																											.	.	.	.	.	.														.	.	.	.	.	.															.	.	.	.	.
Template Sequence		.	V	P	F	E	L	E	A	L	L	X	K	H	E	A	V	X	D	V	A	V	I	G	K	P	D	P	.	.	.	.	.	.	K	A	F	I	V	L	K	P	E	Y	R	G	K	.	.	.	.	.	.	V	D	E	E	D	I	I	E	W	V	R	E	R	I	.	.	.	.	.	S	R	E	V	E	F	V	E	E
Template Known Secondary structure		.										T	T	S	T	T													.	.	.	.	.	.								S	T	T	T	T	S	.	.	.	.	.	.												T	T		.	.	.	.	.
Template Predicted Secondary structure		.																											.	.	.	.	.	.														.	.	.	.	.	.															.	.	.	.	.
Template SS confidence
			436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.							.	.	.	.	.	.	.	.	470	.	.	.	.							.	.	.	.	.	480	.	.	.	.	.	.	.	.						.	490	.	.	.	.	.	.	.
		585	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		521	.