Job Description P77495 Confidence 100.00% Date Thu Jan 5 12:29:54 GMT 2012 Rank 9 Aligned Residues 521 % Identity 25% Template c3eynB_ PDB info PDB header:ligase Chain: B: PDB Molecule:acyl-coenzyme a synthetase acsm2a; PDBTitle: crystal structure of human acyl-coa synthetase medium-chain2 family member 2a (l64p mutation) in a complex with coa Resolution 1.90 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.						.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.																																									.
Query SS confidence																					.	.	.	.	.																																									.
Query Sequence		A	R	W	F	C	E	G	R	T	N	L	C	H	N	A	I	D	R	W	.	.	.	.	.	L	E	K	Q	P	E	A	L	A	L	I	A	V	S	S	E	T	E	E	E	R	T	F	T	F	R	Q	L	H	D	E	V	N	A	V	A	S	M	L	R	.	S	L	G	V	Q	R	G	D	R	V	L	V	Y	M	P
Query Conservation																					.	.	.	.	.																																									.
Alig confidence																					.	.	.	.	.																	.																								.
Template Conservation																																										.
Template Sequence		G	H	Q	E	V	P	A	K	F	N	F	A	S	D	V	L	D	H	W	A	D	M	E	K	A	G	K	R	P	P	S	P	A	L	W	W	V	N	G	K	.	G	K	E	L	M	W	N	F	R	E	L	S	E	N	S	Q	Q	A	A	N	V	L	S	G	A	C	G	L	Q	R	G	D	R	V	A	V	V	L	P
Template Known Secondary structure			B					S	B							T										T	T	S	S											S	S	.	S																							T	T	T				T	T
Template Predicted Secondary structure																																										.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	A	E	A	H	I	T	L	L	A	C	A	R	I	G	A	I	H	S	V	V	F	G	G	F	A	S	H	S	V	A	A	R	I	D	D	A	K	P	V	L	I	V	S	A	D	A	G	A	R	G	G	K	I	I	P	Y	K	K	L	L	D	D	A	I	S	Q	A	Q	H	Q	P	R	H	V	L	L	V	D
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.
Template Sequence		R	V	P	E	W	W	L	V	I	L	G	C	I	R	A	G	L	I	F	M	P	G	T	I	Q	M	K	S	T	D	I	L	Y	R	L	Q	M	S	K	A	K	A	I	V	A	G	.	.	.	.	.	.	.	.	.	D	E	V	I	Q	E	V	D	T	V	A	S	E	C	P	S	L	R	I	K	L	L	V	S	E
Template Known Secondary structure		S														T	T								T	T														T		S						.	.	.	.	.	.	.	.	.	T	T	T								G	G	G		T	T								S	S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160										.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	L	A	K	M	A	R	V	S	G	R	D	V	D	F	A	S	L	R	H	Q	H	I	G	A	R	V	P	V	A	W	L	E	S	N	E	T	S	C	I	L	Y	T	S	G	T	T	G	K	P	K	G	V	Q	R	D	V	G	G	Y	A	V	A	L	A	T	S	M	D	T	I	F	G	G	K	A	G	S	V
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.																																																								.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.																																																								.
Template Sequence		K	.	.	.	.	.	.	.	.	.	.	.	S	C	D	G	W	L	N	F	K	K	L	L	N	E	A	S	T	T	H	H	C	V	E	T	G	S	Q	E	A	S	A	I	Y	F	T	S	G	L	P	K	M	A	E	H	S	Y	S	S	L	G	L	K	A	K	M	.	D	A	G	W	T	G	L	Q	A	S	D	I
Template Known Secondary structure		S	.	.	.	.	.	.	.	.	.	.	.			T	T											S		S								B	T	T	S																												.		T	T	T	T	S			T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.																																																								.
Template SS confidence
		186												.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	C	A	S	D	I	G	W	V	V	G	H	S	Y	I	V	Y	A	P	L	L	A	G	M	A	T	I	V	Y	E	G	L	P	T	W	P	D	C	G	V	W	W	T	I	V	E	K	Y	Q	V	S	R	M	F	S	A	P	T	A	I	R	V	L	K	K	F	P	T	A	E	I	R	K	H	D	L	S	S	L
Query Conservation
Alig confidence																																	.	.																																									.	.	.
Template Conservation																																	.	.																																									.	.	.
Template Sequence		M	W	T	I	S	D	T	G	W	I	L	N	I	L	C	S	L	M	E	P	W	A	L	G	A	C	T	F	V	H	L	.	.	L	P	K	F	D	P	L	V	I	L	K	T	L	S	S	Y	P	I	K	S	M	M	G	A	P	I	V	Y	R	M	L	L	Q	Q	D	L	S	S	Y	K	.	.	.	F	P	H	L
Template Known Secondary structure								T	T	S							T	T							T								.	.		S	S													S																	T	S		T	T	S	S		.	.	.		T	T
Template Predicted Secondary structure																																	.	.																																									.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.				.	.	330	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	L	Y	L	A	G	E	P	L	D	E	P	T	A	S	W	V	S	N	T	L	D	V	P	V	I	D	N	Y	W	Q	T	E	S	G	W	P	I	M	A	I	A	R	G	L	D	D	R	P	T	R	L	G	S	P	G	V	P	M	Y	G	Y	N	V	Q	L	L	N	E	V	T	G	E	P	C	G	V	N	E
Query Conservation
Alig confidence																																											.	.	.	.																									.
Template Conservation																																											.	.	.	.																									.
Template Sequence		Q	N	C	V	T	V	G	E	S	L	L	P	E	T	L	E	N	W	R	A	Q	T	G	L	D	I	R	E	S	Y	G	Q	T	E	T	G	L	T	C	M	V	.	.	.	.	S	K	T	M	K	I	K	P	G	Y	M	G	T	A	A	S	C	Y	D	V	Q	I	I	D	.	D	K	G	N	V	L	P	P	G	T
Template Known Secondary structure								S	S															S										T	T	T							.	.	.	.		T	T	S				T	T							T	T								.	T	T	S		B			T	T
Template Predicted Secondary structure																																											.	.	.	.																									.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.					.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.		.	.	.	400	.	.	.	.	.	.
		437	.	.	440	.	.	.	.	.	.			.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		K	G	M	L	V	V	E	G	P	L	.	.	P	P	G	C	I	Q	T	I	W	G	D	D	G	R	F	V	K	T	Y	W	S	L	F	S	R	P	V	Y	A	T	F	D	W	G	I	R	D	A	D	G	Y	H	F	I	L	G	R	T	D	D	V	I	N	V	A	G	H	R	L	G	T	R	E	I	E	E	S	I
Query Conservation												.	.
Alig confidence												.	.																			.	.	.	.
Template Conservation																																.	.	.	.
Template Sequence		E	G	D	I	G	I	R	V	K	P	I	R	P	I	G	I	F	S	G	Y	V	D	N	P	D	K	T	A	A	N	.	.	.	.	I	R	G	D	F	W	L	L	G	D	R	G	I	K	D	E	D	G	Y	F	Q	F	M	G	R	A	D	D	I	I	N	S	S	G	Y	R	I	G	P	S	E	V	E	N	A	L
Template Known Secondary structure										S	S	B			T	T	S					T	T								T	.	.	.	.			T	T												T	T	S								G	G	G					T	T
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.					.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
		515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	H	P	G	V	A	E	V	A	V	V	G	V	K	D	A	L	K	G	Q	V	A	V	A	F	V	I	P	K	E	S	D	S	L	E	D	R	D	V	A	H	S	Q	E	K	A	I	M	A	L	V	D	S	Q	I	G	N	F	G	R	P	A	H	V	W	F	V	S	Q	L	P	K	T	R	S	G	K	M	L
Query Conservation
Alig confidence																																							.	.	.
Template Conservation																																							.	.	.
Template Sequence		M	E	H	P	A	V	V	E	T	A	V	I	S	S	P	D	P	V	R	G	E	V	V	K	A	F	V	V	L	A	S	Q	F	L	S	H	D	.	.	.	P	E	Q	L	T	K	E	L	Q	Q	H	V	K	S	V	T	A	P	Y	K	Y	P	R	K	I	E	F	V	L	N	L	P	K	T	V	T	G	K	I	Q
Template Known Secondary structure			T	S	T	T												T	T	T												G	G	G	G	G	S		.	.	.																S		G	G	G	S		S						S				B		T	T			B
Template Predicted Secondary structure																																							.	.	.
Template SS confidence
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.				520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
		595	.	.	.	.	600	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	T	I	Q	A	I	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	K	L	R	D	K	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		560	.	.	.	.	.	.	.