Job Description P77495 Confidence 100.00% Date Thu Jan 5 12:29:54 GMT 2012 Rank 29 Aligned Residues 347 % Identity 18% Template c2y4oA_ PDB info PDB header:ligase Chain: A: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of paak2 in complex with phenylacetyl adenylate Resolution 1.90 Å

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		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		I	G	A	R	V	P	V	A	W	L	E	S	N	E	T	S	C	I	L	Y	T	S	G	T	T	G	K	P	K	G	V	Q	R	D	V	G	G	Y	A	V	A	L	A	T	S	M	D	T	I	F	.	.	G	G	K	A	G	S	V	F	F	C	A	S	D	I	G	W	V	V	G	H	S	Y	I	V	Y	A	P	L
Query Conservation																																																				.	.
Alig confidence																																																				.	.
Template Conservation
Template Sequence		D	N	Y	P	F	G	L	F	A	V	P	R	E	Q	V	V	R	V	H	A	S	S	G	T	T	G	K	P	T	V	V	G	Y	T	A	R	D	I	D	T	W	A	N	V	T	A	R	S	I	R	A	A	G	G	R	P	G	D	T	L	H	N	A	F	G	Y	G	L	F	T	G	G	L	G	I	H	Y	G	A	E
Template Known Secondary structure		T	T	T	T	T	T	T		S	S		G	G	G										S	S	S	S																									T	T			T	T							S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	G	M	A	T	I	V	Y	E	G	L	P	T	W	P	D	C	G	V	W	W	T	I	V	E	K	Y	Q	V	S	R	M	F	S	A	P	T	A	I	R	V	L	K	K	F	P	T	A	E	I	R	K	H	D	L	S	S	L	E	V	L	Y	L	A	G	E	P	L	D	E	P	T	A	S	W	V	S	N	T
Query Conservation
Alig confidence														.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		R	L	G	C	M	V	V	P	M	S	G	G	.	.	.	.	Q	T	E	K	Q	V	Q	L	I	R	D	F	E	P	K	I	I	L	V	T	P	S	Y	M	L	N	L	I	D	E	M	V	R	Q	G	M	D	P	A	E	S	S	L	K	I	G	I	F	G	A	E	P	W	T	Q	A	L	R	N	E	V	E	T	R
Template Known Secondary structure				T								S		.	.	.	.															S																			T	T			G	G	G	S	S								S	S
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	V	P	V	I	D	N	Y	W	Q	T	E	S	G	W	P	I	M	A	I	A	R	G	L	D	D	R	P	T	R	L	G	S	P	G	V	P	M	Y	G	Y	N	V	Q	L	L	N	E	V	T	G	E	P	C	G	V	N	E	K	G	M	L	V	V	E	G	P	L	P	P	G	C	I	Q	T	I	W	G	D
Query Conservation
Alig confidence																											.	.	.	.	.																																															.	.	.	.
Template Conservation																											.	.	.	.	.																																															.	.	.	.
Template Sequence		V	G	I	D	A	L	D	I	Y	G	L	S	E	V	M	G	P	G	V	A	C	E	C	V	E	.	.	.	.	.	T	K	D	G	P	V	I	W	E	D	H	F	Y	P	E	I	I	D	P	V	T	G	E	V	L	P	D	G	S	Q	G	E	L	V	F	T	S	L	T	K	E	A	M	P	V	I	.	.	.	.
Template Known Secondary structure			T										T	T	T	T									T	T	.	.	.	.	.	T			S					T	T	T								T	T	T			B			T	T										S	S		S	S	S			S	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.																																															.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.						.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.							.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure																															.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.
Query Sequence		D	G	R	F	V	K	T	Y	W	S	L	F	S	R	P	V	Y	A	T	F	D	W	G	I	R	D	A	D	G	.	.	.	.	.	.	Y	H	F	I	L	G	R	T	D	D	V	I	N	V	A	G	H	R	L	G	T	R	E	I	E	E	S	I	S	S	H	P	G	V	A	E	V	A	V	V	G	V	K	D	A
Query Conservation																															.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	R	T	R	D	L	T	A	L	L	P	P	T	A	R	A	M	R	R	L	A	K	I	T	G	R	S	D	D	M	L	I	V	R	G	V	N	V	F	P	S	Q	I	E	E	I	V	V	A	L	P	L	L	S	G	Q	F	Q	I	T	L	S	R	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S													S	S	S	S	S										S	S						T	T														T	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.		.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		L	K	G	Q	V	A	V	A	F	V	I	P	K	E	S	D	S	L	E	D	R	.	D	V	A	H	S	Q	E	K	A	I	M	A	L	V	D	S	Q	I	G	N	F	G	R	P	A	H	V	W	F	V	S	Q	L	P	K	T	R	S	G	K	M	L	R
Query Conservation																							.
Alig confidence																							.																				.
Template Conservation																																											.
Template Sequence		G	H	M	D	R	L	D	L	A	V	E	L	R	S	E	A	A	A	S	V	T	D	G	E	R	A	A	L	A	R	E	L	Q	H	R	I	K	T	M	V	G	.	V	S	S	G	V	T	V	L	A	A	G	G	I	P	A	T	A	T	G	K	A	R	R
Template Known Secondary structure		T	T																T	T																					T		.										T	T		S				T	T	S				S
Template Predicted Secondary structure																																											.
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions