Job Description P77495 Confidence 100.00% Date Thu Jan 5 12:29:54 GMT 2012 Rank 3 Aligned Residues 559 % Identity 20% Template c2vsqA_ PDB info PDB header:ligase Chain: A: PDB Molecule:surfactin synthetase subunit 3; PDBTitle: structure of surfactin a synthetase c (srfa-c), a2 nonribosomal peptide synthetase termination module Resolution 2.60 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	E	F	Y	Q	R	S	I	N	E	P	E	Q	F	W	A	E	Q	A	R	R	I	D	W	Q	T	P	F	T	Q	T	L	D	H	S	N	P	P	F	A	R	W	F	C	E	G	R	T	N	L	C	H	N	A	I	D	R	W	L	E	K	Q	P	E	A	L	A	L	I	A	V	S	S	E	T	E	E	E	R
Query Conservation
Alig confidence																.	.	.																														.	.	.																						.	.	.	.	.	.
Template Conservation																.	.	.																														.	.	.																						.	.	.	.	.	.
Template Sequence		L	L	T	A	I	Q	Q	L	I	Q	N	P	D	Q	.	.	.	P	V	S	T	I	N	L	V	D	D	R	E	R	E	F	L	L	T	G	L	N	P	P	A	Q	A	H	E	T	.	.	.	K	P	L	T	Y	W	F	K	E	A	V	N	A	N	P	D	A	P	A	L	T	.	.	.	.	.	.	Y	S	G	Q
Template Known Secondary structure												S	T	T	S	.	.	.	B	G	G	G														T	T	T	S									.	.	.															T	T	S					.	.	.	.	.	.	S	S	S
Template Predicted Secondary structure																.	.	.																														.	.	.																						.	.	.	.	.	.
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.				.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.				.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.							.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	T	F	R	Q	L	H	D	E	V	N	A	V	A	S	M	L	R	S	L	G	V	Q	R	G	D	R	V	L	V	Y	M	P	M	I	A	E	A	H	I	T	L	L	A	C	A	R	I	G	A	I	H	S	V	V	F	G	G	F	A	S	H	S	V	A	A	R	I	D	D	A	K	P	V	L	I	V	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	S	Y	R	E	L	D	E	E	A	N	R	I	A	R	R	L	Q	K	H	G	A	G	K	G	S	V	V	A	L	Y	T	K	R	S	L	E	L	V	I	G	I	L	G	V	L	K	A	G	A	A	Y	L	P	V	D	P	K	L	P	E	D	R	I	S	Y	M	L	A	D	S	A	A	A	C	L	L	T	H
Template Known Secondary structure																						T	T			T	T									S	S													T	T								T	T	S													T
Template Predicted Secondary structure
Template SS confidence
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	G	A	R	G	G	K	I	I	P	Y	K	K	L	L	D	D	A	I	S	Q	A	Q	H	Q	P	R	H	V	L	L	V	D	R	G	L	A	K	M	A	R	V	S	G	R	D	V	D	F	A	S	L	R	H	Q	H	I	G	A	R	V	P	V	A	W	L	E	S	N	E	T	S	C	I	L	Y	T	S	G
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	E	M	K	E	Q	A	A	E	L	P	Y	T	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	F	I	D	D	Q	T	R	F	E	E	Q	A	S	D	P	A	T	A	I	D	P	N	D	P	A	Y	I	M	Y	T	S	G
Template Known Secondary structure		S	T	T		T	T	S	T	T					S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S		G	G	G	G	G	S		S	S								T	T	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		569	570	.	.	.	.	.	.	.	.	.	580	.	.	.																																.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	G	K	P	K	G	V	Q	R	D	V	G	G	Y	A	V	A	L	A	T	S	M	D	T	I	F	G	G	K	A	G	S	V	F	F	C	A	S	D	I	G	W	V	V	G	H	S	Y	I	V	Y	A	P	L	L	A	G	M	A	T	I	V	Y	E	G	L	P	T	W	P	D	C	G	V	W	W	T	I	V
Query Conservation
Alig confidence																							.	.																									.																				.
Template Conservation																							.	.																									.																				.
Template Sequence		T	T	G	K	P	K	G	N	I	T	T	H	A	N	I	Q	G	L	V	K	H	.	.	V	D	Y	M	A	F	S	D	Q	D	T	F	L	S	V	S	N	Y	A	F	D	A	F	T	.	F	D	F	Y	A	S	M	L	N	A	A	R	L	I	I	A	D	E	H	.	T	L	L	D	T	E	R	L	T	D	L	I
Template Known Secondary structure		S	S	S	S																S	S	.	.			S	S				T	T							S		T	T	S	T				.								T	T	T								G	G	.	G	T	T
Template Predicted Secondary structure																							.	.																									.																				.
Template SS confidence
		618	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.			.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.		.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.		.	.	.	.	.	.	.	.	690	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		E	K	Y	Q	V	S	R	M	F	S	A	P	T	A	I	R	V	L	K	K	F	P	T	A	E	I	R	K	H	D	L	S	S	L	E	V	L	Y	L	A	G	E	P	L	D	E	P	T	A	S	W	V	S	N	T	L	.	D	V	P	V	I	D	N	Y	W	Q	T	E	S	G	W	P	I	M	A	I	A	R	G
Query Conservation																																																										.
Alig confidence																											.	.	.	.	.																											.
Template Conservation																											.	.	.	.	.
Template Sequence		L	Q	E	N	V	N	V	M	F	A	T	T	A	L	F	N	L	L	T	D	A	G	E	D	W	.	.	.	.	.	M	K	G	L	R	C	I	L	F	G	G	E	R	A	S	V	P	H	V	R	K	A	L	R	I	M	G	P	G	K	L	I	N	C	Y	G	P	T	E	G	T	V	F	A	T	A	H	V	V	H
Template Known Secondary structure					T																			S			.	.	.	.	.			T		S						S	S																T	T									G	G	G	S	S		S
Template Predicted Secondary structure																											.	.	.	.	.
Template SS confidence
		694	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.						.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.				.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.
Query SS confidence																																																																					.	.	.
Query Sequence		L	D	D	R	P	T	R	L	G	S	P	G	V	P	M	Y	G	Y	N	V	Q	L	L	N	E	V	T	G	E	P	C	G	V	N	E	K	G	M	L	V	V	E	G	P	L	P	P	G	C	I	Q	T	I	W	G	D	D	G	R	F	V	K	T	Y	W	S	L	.	.	.	F	S	R	P	V	Y	A	T	F	D
Query Conservation																																																																					.	.	.
Alig confidence																												.																		.	.	.																					.	.	.
Template Conservation																												.																		.	.	.
Template Sequence		D	L	P	D	S	I	S	S	L	P	I	G	K	P	I	S	N	A	S	V	Y	I	L	N	E	Q	.	S	Q	L	Q	P	F	G	A	V	G	E	L	C	I	S	G	M	.	.	.	G	V	S	K	G	Y	V	N	R	A	D	L	T	K	E	K	F	I	E	N	P	F	K	P	G	E	T	L	Y	R	T	G	D
Template Known Secondary structure					S	S		S	S				B				T	T								T	T	.	S		B			T	T										T	.	.	.	T					B	T	T													T	T	S	T	T
Template Predicted Secondary structure																												.																		.	.	.
Template SS confidence
		769	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.		.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.				.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	G	I	R	D	A	D	G	Y	H	F	I	L	G	R	T	D	D	V	I	N	V	A	G	H	R	L	G	T	R	E	I	E	E	S	I	S	S	H	P	G	V	A	E	V	A	V	V	G	V	K	D	A	L	K	G	Q	V	A	V	A	F	V	I	P	K	E	S	D	S	L	E	D	R	D	V	A	H	S	Q
Query Conservation
Alig confidence																																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	R	W	L	P	D	G	T	I	E	Y	A	G	R	I	D	D	Q	V	K	I	R	G	H	R	I	E	L	E	E	I	E	K	Q	L	Q	E	Y	P	G	V	K	D	A	V	V	V	A	D	R	H	E	S	G	D	A	S	I	N	A	Y	L	V	N	R	T	Q	L	S	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T	S								G	G	G					T	T															S	S	S												S	S	S											S	S	S	S		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		845	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.				.	.	620	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.
Query SS confidence																																																													.	.	.
Query Sequence		E	K	A	I	M	A	L	V	D	S	Q	I	G	N	F	G	R	P	A	H	V	W	F	V	S	Q	L	P	K	T	R	S	G	K	M	L	R	R	T	I	Q	A	I	C	E	G	R	D	P	G	D	L	T	T	I	D	D	P	A	.	.	.	S	L	D	Q	I	R	Q	A	M	E
Query Conservation																																																													.	.	.
Alig confidence																																																													.	.	.
Template Conservation
Template Sequence		A	E	D	V	K	A	H	L	K	K	Q	L	P	A	Y	M	V	P	Q	T	F	T	F	L	D	E	L	P	L	T	T	N	G	K	V	N	K	R	L	L	P	K	P	D	Q	D	Q	L	A	E	E	W	I	G	P	R	N	E	M	E	E	T	I	A	Q	I	W	S	E	V	L	G
Template Known Secondary structure													S		G	G	G	S		S						S						S	S		S	S			S							G	G	G	G								S	S															T
Template Predicted Secondary structure
Template SS confidence
		915	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.