Job Description P77493 Confidence 99.65% Date Thu Jan 5 12:29:52 GMT 2012 Rank 45 Aligned Residues 176 % Identity 15% Template c3mbjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase; PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form) Resolution 2.10 Å

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		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.									.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.
Query Sequence		S	L	W	K	L	N	I	D	D	V	D	F	A	R	F	S	Q	A	K	L	L	S	L	A	S	I	F	N	S	P	L	L	D	G	K	A	L	T	E	I	F	T	Q	A	K	A	R	Q	M	I	I	C	A	D	M	I	.	.	.	.	.	.	.	.	K	P	R	L	N	E	T	L	D	D	I	C	E	A	L	S
Query Conservation																																																										.	.	.	.	.	.	.	.
Alig confidence																																																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	L	T	D	E	X	P	K	I	I	A	E	W	K	K	L	E	V	Q	F	D	A	I	Y	T	G	Y	L	G	S	P	R	Q	I	Q	I	V	S	D	F	I	K	D	F	R	Q	P	D	S	L	I	V	A	D	P	V	L	G	D	N	G	R	L	Y	T	N	F	D	X	E	X	V	K	E	X	R	H	L	I	T
Template Known Secondary structure				T	T	T												T				S									S																	T	T												T	T				T	T														T
Template Predicted Secondary structure
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.									.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.						.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.																										.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.																										.	.	.	.	.
Query Sequence		Y	V	D	Y	L	F	P	N	F	A	E	A	K	L	L	T	G	K	E	.	.	.	.	.	.	.	.	T	L	D	E	I	A	D	C	F	L	A	C	G	V	K	T	V	V	I	K	T	G	K	D	G	.	.	.	.	.	C	F	I	K	R	G	D	M	T	M	K	V	P	A	V	A	G	I	T	A	I	D	T
Query Conservation																					.	.	.	.	.	.	.	.																										.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.																										.	.	.	.	.																				.
Template Conservation																																																																														.
Template Sequence		K	A	D	V	I	T	P	N	L	T	E	L	F	Y	L	L	D	E	P	Y	K	A	D	S	T	D	E	E	L	K	E	Y	L	R	L	L	S	D	K	G	P	Q	V	V	I	I	T	S	V	P	V	H	H	K	T	S	V	Y	A	Y	N	R	Q	G	N	R	Y	W	K	V	T	C	P	Y	L	P	.	A	H	Y
Template Known Secondary structure		T		S					B									T					S																T	T	S		S																				T	T	T	T											S	.
Template Predicted Secondary structure																																																																														.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	A	G	D	N	F	A	S	G	F	I	A	A	L	L	E	G	K	N	L	R	E	C	A	R	F	A	N	A	T	A	A	I	S	V	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	G	T	G	D	T	F	T	S	V	I	T	G	S	L	X	Q	G	D	S	L	P	X	A	L	D	R	A	T	Q	F	I	L	Q	G	I	R	A
Template Known Secondary structure		T	T															T	T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions