Job Description P77493 Confidence 100.00% Date Thu Jan 5 12:29:52 GMT 2012 Rank 40 Aligned Residues 279 % Identity 16% Template c3bf5A_ PDB info PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution Resolution 1.91 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	V	I	C	I	G	A	A	I	V	D	I	P	L	Q	P	V	S	K	N	I	F	D	V	D	S	Y	P	L	E	R	I	A	M	T	T	G	G	D	A	I	N	E	A	T	I	I	S	R	L	G	H	R	T	A	L	M	S	R	I	G	K	D	A	A	G	Q	F	I	L	D	H	C	R	K	E	N	I	D
Query Conservation
Alig confidence																		.										.																																												.
Template Conservation																		.										.																																												.
Template Sequence		R	F	L	A	Y	F	G	H	L	N	I	D	V	L	I	S	.	V	D	S	I	P	R	E	G	S	.	V	N	V	K	D	L	R	P	R	F	G	G	T	A	G	N	F	A	I	V	A	Q	K	F	R	I	P	F	D	L	Y	S	A	V	G	X	K	T	H	R	E	Y	L	.	A	X	I	E	S	X	G	I	N
Template Known Secondary structure																		.		S				S	S	S		.				S																				T	T											T	T	T						.						T	T
Template Predicted Secondary structure																		.										.																																												.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	S	L	K	Q	D	V	S	I	D	T	S	I	N	V	G	L	V	T	E	D	G	E	R	T	F	V	T	N	R	N	G	S	L	W	K	L	N	I	D	D	V	D	F	A	R	F	S	Q	A	K	L	L	S	L	A	S	I	F	N	S	P	L	L	D	G	K	A	L	T	E	I	F	T	Q	A	K	A	R
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	G	H	V	E	K	F	E	D	E	S	G	P	I	C	Y	I	A	T	D	G	K	K	Q	V	S	F	X	H	Q	G	A	.	.	.	.	.	.	.	X	A	A	W	A	P	Q	L	A	D	E	Y	E	Y	V	H	F	S	T	G	P	N	.	.	.	.	.	.	.	.	.	.	.	Y	L	D	X	A	K	S	I
Template Known Secondary structure			T	T					T	T				S								S	S									T		.	.	.	.	.	.	.										S									S	S	S	S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110								.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.												.	.	.	.	.	.	.	140
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	I	I	C	A	D	M	I	K	P	R	L	N	E	T	L	D	D	I	C	E	A	L	S	Y	V	D	Y	L	F	P	N	F	A	E	A	K	L	L	T	G	K	E	T	L	D	E	I	A	D	C	F	L	A	C	G	V	K	T	V	V	I	K	T	G	K	D	G	C	F	I	K	R	G	D	M	T	M	K
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.
Template Sequence		R	S	K	I	I	F	D	P	S	Q	E	I	H	K	Y	S	K	D	E	L	K	K	F	H	E	I	S	Y	X	S	I	F	N	D	H	E	Y	R	V	F	.	.	.	.	.	.	.	.	R	E	X	T	G	L	S	S	P	K	V	T	T	I	V	T	N	G	E	R	G	S	S	L	F	X	D	G	K	K	Y	D
Template Known Secondary structure			S							G	G	G	G	G	G	S													S													.	.	.	.	.	.	.	.							S	S		S	S							G	G	G							T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180									.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	A	V	A	G	I	T	A	I	D	T	I	G	A	G	D	N	F	A	S	G	F	I	A	A	L	L	E	G	K	N	L	R	E	C	A	R	F	A	N	A	T	A	A	I	S	V	L	S	V	G	A	T	T	G	V	K	N	R	K	L	V	E	Q	L	L	E	E	Y	E
Query Conservation
Alig confidence									.	.																																								.
Template Conservation									.	.																																								.
Template Sequence		F	P	A	I	P	S	S	.	.	G	D	T	V	G	A	G	D	S	F	R	A	G	L	Y	L	A	L	Y	N	R	R	S	I	E	K	G	X	I	Y	G	T	I	I	A	H	H	V	I	.	D	D	G	I	E	N	F	S	L	N	X	E	D	L	E	R	E	T	E	N	Y	R
Template Known Secondary structure									.	.	S			T	T															T	T																			.				S	T	T
Template Predicted Secondary structure									.	.																																								.
Template SS confidence
		213	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions