Return to main results Retrieve Phyre Job Id

Job DescriptionP07021
Confidence100.00%DateThu Jan 5 11:00:04 GMT 2012
Rank3Aligned Residues118
% Identity38%Templatec3td4D_
PDB info PDB header:membrane protein,peptide binding proteinChain: D: PDB Molecule:outer membrane protein omp38; PDBTitle: crystal structure of ompa-like domain from acinetobacter baumannii in2 complex with diaminopimelate
Resolution1.79 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   41........50.........60.........70.........80.........90.........100.........110.........120
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  ESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGG
Query Conservation               
 
   
  
       
  

  
       
 
 



  
    
  

  

  
   
   
Alig confidence 















































































Template Conservation   
     
 
   
 
   
  
       
  

  
       
 
 



  
    
  

  

 

   
    
Template Sequence  HMELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEY
Template Known Secondary structure 







TT




GGGSTT



S
S
TT
Template Predicted Secondary structure 

























Template SS confidence 















































































   219220.........230.........240.........250.........260.........270.........280.........290........
 
   121........130.........140.........150........
Predicted Secondary structure 

















Query SS confidence 





































Query Sequence  QIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVIT
Query Conservation        
   
 
   
            





 
 
Alig confidence 





































Template Conservation 

   

     
   
            





 
 
Template Sequence  NVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATIT
Template Known Secondary structure 


GGG
TTSS
SS
TTSS
Template Predicted Secondary structure 

















Template SS confidence 





































   299300.........310.........320.........330......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions