|   |
11 | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | |
. | . | . | |
|
. | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | |
|
|
|
|
|
|
|
. | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | 70 | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  | . |  |  |
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  | . | . | . | . | . | . | . | . |  |
|
|
|
| . | . | . | . | . | . | . |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
Query Sequence |   |
K | S | T | R | I | Y | V | G | N | V | P | I | G | D | G | A | P | I | A | V | Q | S | . |
M | T | N | . |
. |
T | R | T | T | D | V | E | A | T | V | N | Q | I | K | A | L | E | R | V | G | A | D | I | V | R | . |
. |
. |
. |
. |
. |
. |
. |
V | S | V | P | T | . |
. |
. |
. |
. |
. |
. |
M | D | A | A | E | A | F |
Query Conservation |   |
  |
|
|   |
|   |
|
|   |
|   |
|
|
|   |   |
|
|   |
|
|
| . |
|   |   | . | . |
|   |
|   |
|   |
|
|   |
|   |
|
|   |   |
|   |   |   |
|   |
|
|
|
| . | . | . | . | . | . | . | . |
|   |
|   |   | . | . | . | . | . | . | . |   |   |   |
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |
|   |   |   |   |
|
|   |   |   |
|   |   |
|
|
|
|
|
|   |   |   |
|   |   |   |   |
|   |   |
|   |   |
|
|   |   |
|   |   |   |
|
|
|   |
|
|   |
|   |   |   |   |   |   |
|
|
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|
Template Sequence |   |
K | Q | K | V | V | S | I | G | D | I | N | V | A | N | D | L | P | F | V | L | F | G | G | M | N | V | L | E | S | R | D | L | A | M | R | I | C | E | H | Y | V | T | V | T | Q | K | L | G | I | P | Y | V | F | K | A | S | F | D | K | A | N | R | S | S | I | H | S | Y | R | G | P | G | L | E | E | G | M | K | I | F |
Template Known Secondary structure |   |
|
|
|
|  |  |  | T | T |  |  |  |
| T | T | S |
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  | S |
|
| T | T |
| S | S | T | T | S |
|
|
| S |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1002 | . | . | . | . | . | . | . | 1010 | . | . | . | . | . | . | . | . | . | 1020 | . | . | . | . | . | . | . | . | . | 1030 | . | . | . | . | . | . | . | . | . | 1040 | . | . | . | . | . | . | . | . | . | 1050 | . | . | . | . | . | . | . | . | . | 1060 | . | . | . | . | . | . | . | . | . | 1070 | . | . | . | . | . | . | . | . | . | 1080 | . |
  |
  |   |
73 | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | |
. | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
| . |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | L | I | K | Q | Q | V | N | V | P | L | V | A | D | I | H | F | D | Y | R | I | A | L | K | V | A | E | Y | G | V | D | C | L | R | I | N | P | G | N | I | G | N | E | E | R | I | R | M | V | V | D | C | A | R | D | K | N | I | P | I | R | I | G | V | N | . |
A | G | S | L | E | K | D | L | Q | E | K | Y | G | E |
Query Conservation |   |
  |   |
|   |   |   |   |   |
|
|
|
|
|
|
|
|
|   |   |   |   |
|   |   |
|   |   |   |
|   |
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |   |   |   |
|
|
|
|
|
| . |   |
|
|
|   |   |   |   |   |   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . | . | . |
Template Conservation |   |
  |   |   |   |   |   |   |
|
|   |   |   |
|
|   | . |   |
|   |   |   |   |   |   |
|   |   |   | . |
|   |   |   |
|
|
|
|   |   |   |   |
|   |   |
|
|   |   |
|
| . | . | . | . |   |   |
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |   |
| . | . | . | . |
Template Sequence |   |
Q | E | L | K | Q | T | F | G | V | K | I | I | T | D | V | . |
H | E | P | S | Q | A | Q | P | V | A | D | V | . |
V | D | V | I | Q | L | P | A | F | L | A | R | Q | T | D | L | V | E | A | M | A | . |
. |
. |
. |
K | T | G | A | V | I | N | V | K | K | P | Q | F | V | S | P | G | Q | M | G | N | I | . |
. |
. |
. |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |
|
|  |  |  |  |  |
| . |
| S | G | G | G |  |  |  |  |  | T | T | . |
| S |  |  |  |  |
| G | G | G | T | T |
|  |  |  |  |  |  |  |  | . | . | . | . |  | T | T |
|  |  |  |  |  |
|
| T | T | S |
| G | G | G |  |  |  |  | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  | . | . | . | . |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1082 | . | . | . | . | . | . | . | 1090 | . | . | . | . | . | . | |
. | . | . | 1100 | . | . | . | . | . | . | . | . | |
. | 1110 | . | . | . | . | . | . | . | . | . | 1120 | . | . | . | . | . | . | . | . | . | |
|
|
|
1130 | . | . | . | . | . | . | . | . | . | 1140 | . | . | . | . | . | . | . | . | . | 1150 | . | |
|
|
|
  |
  |   |
152 | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | T | P | Q | A | L | L | E | S | A | M | R | H | V | D | H | L | D | R | L | N | F | D | Q | F | K | V |
Query Conservation |   |
  |
|   |
|   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |
|   |   |   |
|
|   |   |
|   |
|
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | D | K | F | K | E | G | G | N | E | K | V | I | L |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  | T | T |
|
|
|  |  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
1152 | . | . | . | . | . | . | . | 1160 | . | . | . | . | . |
  |