Job Description P62620 Confidence 96.13% Date Thu Jan 5 12:07:43 GMT 2012 Rank 81 Aligned Residues 142 % Identity 13% Template c3stgA_ PDB info PDB header:transferase Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase; PDBTitle: crystal structure of a58p, del(n59), and loop 7 truncated mutant of 3-2 deoxy-d-manno-octulosonate 8-phosphate synthase (kdo8ps) from3 neisseria meningitidis Resolution 2.20 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.								.	.	.	.								.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																					.									.	.																						.	.	.	.	.	.	.					.	.	.	.	.	.	.
Query SS confidence																					.									.	.																						.	.	.	.	.	.	.					.	.	.	.	.	.	.
Query Sequence		R	I	Y	V	G	N	V	P	I	G	D	G	A	P	I	A	V	Q	S	.	M	T	N	T	R	T	T	D	.	.	V	E	A	T	V	N	Q	I	K	A	L	E	R	V	G	A	D	I	V	R	V	.	.	.	.	.	.	.	S	V	P	T	.	.	.	.	.	.	.	M	D	A	A	E	A	F	K	L	I	K
Query Conservation																					.									.	.																						.	.	.	.	.	.	.					.	.	.	.	.	.	.
Alig confidence																					.									.	.																						.	.	.	.	.	.	.					.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	I	K	I	N	D	I	T	L	G	N	N	S	P	F	V	L	F	G	G	I	N	V	L	E	S	L	D	S	T	L	Q	T	C	A	H	Y	V	E	V	T	R	K	L	G	I	P	Y	I	F	K	A	S	F	D	K	P	R	S	S	I	H	S	Y	R	G	V	G	L	E	E	G	L	K	I	F	E	K	V	K
Template Known Secondary structure						T	T					T	T	S																																T									S			T	T	S		T	T	S				S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		Q	Q	V	N	V	P	L	V	A	D	I	H	F	D	Y	R	I	A	L	K	V	A	E	Y	G	V	D	C	L	R	I	N	P	G	N	I	G	N	E	E	R	I	R	M	V	V	D	C	A	R	D	K	N	I	P	I	R	I	G	V	N	.	A	G	S	L	E	K	D	L	Q	E	K	Y	G	E	P	T	P	Q
Query Conservation																																																															.
Alig confidence													.													.														.	.	.	.																				.											.	.	.	.	.	.	.	.
Template Conservation													.													.														.	.	.	.																															.	.	.	.	.	.	.	.
Template Sequence		A	E	F	G	I	P	V	I	T	D	V	.	H	E	P	H	Q	C	Q	P	V	A	E	V	.	C	D	V	I	Q	L	P	A	F	L	A	R	Q	.	.	.	.	T	D	L	V	V	A	M	A	K	T	G	N	V	V	N	I	K	K	P	Q	F	L	S	P	S	Q	M	K	N	I	.	.	.	.	.	.	.	.
Template Known Secondary structure													.		S											.		S						G	G	G	T	T		.	.	.	.																				T	T	S		G	G	G					.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.													.														.	.	.	.																															.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	L	E	S	A	M	R	H	V	D	H	L	D	R	L	N	F	D	Q	F	K	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	V	E	K	F	H	E	A	G	N	G	K	L	I	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.							T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											148	.	150	.	.	.	.	.	.	.	.	.	160	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions