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Job DescriptionP62620
Confidence85.51%DateThu Jan 5 12:07:43 GMT 2012
Rank253Aligned Residues187
% Identity17%Templatec3k2gA_
PDB info PDB header:resiniferatoxin binding proteinChain: A: PDB Molecule:resiniferatoxin-binding, phosphotriesterase- PDBTitle: crystal structure of a resiniferatoxin-binding protein from2 rhodobacter sphaeroides
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   35....40.........50.........60...... ...70.........80.........90 .....
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Query Sequence  NTRTTDVEATVNQIKALERVGADIVRVSVPTM. . DAAEAFKLIKQQVNVPLVADIHFD. . . . . . . . . . . . . . . . . YRIAL
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Template Sequence  NIALDDLDLAIAEVKQFAAVGGRSIVDPTCRGIGRDPVKLRRISAETGVQVVXGAGYYLASSXPETAARLSADDIADEIV
Template Known Secondary structure  TS

TT




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SB

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GGGGT

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   77..80.........90.........100.........110.........120.........130.........140.........150......
 
   96...100.........110.... .....120.........130.........140.........150.........160....
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Query Sequence  KVAEYGVDCLRINPGNIGN. . . . . . . . . . . EERIRMVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLESAMRH
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Template Sequence  AEALEGTDGTDARIGLIGEIGVSSDFTAEEEKSLRGAARAQVRTGLPLXVHLPGW. . . . . . . . . . . . FRL. . . . . . AHRV
Template Known Secondary structure  T
BTTBS


SS

TT






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   157..160.........170.........180.........190.........200.........210. ... ....
 
   165....170... ......180.........190......... 200.........210.........220.........230.......
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Query Sequence  VDHLDRLNF. . DQFKVSVKASDVFLAVESYRLLAKQI. . . . . DQPLHLGITEAGGARSGAVKSAIGLGLLLSEGIGDTLR
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Template Sequence  LDLVEEEGADLRHTVLCHXNPSHXDPVYQATLAQRGAFLEFDXIGXDFFYADQGVQCPSDDEVARAILGLADHGYLDRIL
Template Known Secondary structure  TT

GGG


GGGTT
T


TT


TTTT


TT
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   219220.........230.........240.........250.........260.........270.........280.........290........
 
   238.
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Query Sequence  VS
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Template Sequence  LS
Template Known Secondary structure 
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Template SS confidence 

   299300
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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