 |
Job Description | P62620 | Confidence | 95.66% | Date | Thu Jan 5 12:07:43 GMT 2012 |
Rank | 103 | Aligned Residues | 98 |
% Identity | 12% | Template | c3fv9D_ |
PDB info |
PDB header:hydrolase | Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; |
PDBTitle: crystal structure of putative mandelate racemase/muconatelactonizing2 enzyme from roseovarius nubinhibens ism complexed with magnesium
|
Resolution | 1.90 Å |
|
 |
  |   |
40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | |
90 | . | . | . | . | . | . | . | . | . | 100 | . | |
. | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
| . |
|  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | V | E | A | T | V | N | Q | I | K | A | L | E | R | V | G | A | D | I | V | R | V | S | V | P | T | M | D | A | A | E | A | F | K | L | I | K | Q | Q | V | N | V | P | L | V | A | D | I | H | F | . |
D | Y | R | I | A | L | K | V | A | E | Y | G | . |
V | D | C | L | R | I | N | P | G | N | I | G | N | E | E | R |
Query Conservation |   |
|   |
|
|   |
|   |
|
|   |   |
|   |   |   |
|   |
|
|
|
|
|   |
|   |   |   |   |   |
|   |
|
|   |   |
|   |   |   |   |   |
|
|
|
|
|
|
|
|
| . |   |   |   |   |
|   |   |
|   |   |   |
| . |   |
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|   |   | . | . | . |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|   |   |
|   |   |   |   |
|
|
|
|   |
Template Sequence |   |
T | V | E | H | A | L | R | M | L | S | L | L | P | P | G | L | D | I | V | L | E | A | P | C | A | . |
. |
. |
S | W | A | E | T | K | S | L | R | A | R | C | A | L | P | L | L | L | D | E | L | I | Q | T | E | T | D | L | I | A | A | I | R | D | D | L | C | D | G | V | G | L | K | V | S | K | Q | G | G | I | T | P |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  | S |
| S | S |
|
|
|  |  |  |
|
|
| S | . | . | . | S |  |  |  |  |  |  |  |  | T | T |
|
| S |
|  |  |  | S | T | T |
|
| S |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  |  |  |  |  |  | T | S |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
| . | . | . |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
204 | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | |
|
|
. | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 |
  |
  |   |
118 | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | R | M | V | V | D | C | A | R | D | K | N | I | P | I | R | I | G | V | N | A | G | S |
Query Conservation |   |
  |   |   |
|
|   |   |
|
|   |   |   |   |   |
|
|
|
|
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
M | L | R | Q | R | A | I | A | A | A | A | G | M | V | M | S | V | Q | D | T | V | G | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |
| S | S |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
281 | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|