 |
Job Description | P62620 | Confidence | 55.37% | Date | Thu Jan 5 12:07:43 GMT 2012 |
Rank | 383 | Aligned Residues | 84 |
% Identity | 12% | Template | c3d22A_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:thioredoxin h-type; |
PDBTitle: crystal structure of a poplar thioredoxin h mutant,2 pttrxh4c61s
|
Resolution | 1.60 Å |
|
 |
  |   |
271 | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | T | C | S | R | Q | E | F | D | V | I | G | T | V | N | A | L | E | Q | R | L | E | D | I | I | T | P | M | D | V | S | I | I | G | C | V | V | N | G | P | G | E | A | L | V | S | T | L | G | V | T | G | G | N | K | K | S | G | L | Y | E | D | G | V | R | K | D | R | L | D | N | N | D | M | I | D | Q | L | E | A |
Query Conservation |   |
|
|
|
|
|   |
|   |
|
|   |   |   |
|   |   |
|   |   |
|
|   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|
|
|
|
|
|   |   |   |   |   |   |
|
|   |
|
|   |   |
|
|   |
|   |
|   |   |
|
|
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |
| . |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |
|   |   |   |   |   |   | . | . | . | . | . | . |   |   |   |   |   |   |   |
|   |   | . |   |
|
|   |
|   |   |   |   |
|   |   |
|   |   |   |   |
|   |   |   | . |   |   |
|   |   |
Template Sequence |   |
R | W | C | G | P | S | . |
R | Q | I | A | P | Y | Y | I | E | L | S | E | N | Y | P | S | L | M | . |
F | L | V | I | D | V | D | E | L | S | . |
. |
. |
. |
. |
. |
D | F | S | A | S | W | E | I | K | A | . |
T | P | T | F | F | F | L | R | D | G | Q | Q | V | D | K | L | V | G | A | N | K | . |
P | E | L | H | K |
Template Known Secondary structure |   |
T | T |
|  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T | S |  | . |  |  |  |  |  | T | T | T | S |  | . | . | . | . | . | . |  |  |  |  |  | T | T |
|
|  | . |  | S |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  | S |
|
|  | . |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|  | . |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
56 | . | . | . | 60 | . | |
. | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | |
80 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
90 | . | . | . | . | . | . | . | . | . | |
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | |
. | . | . | . | . |
  |
  |   |
351 | . | . | . | . | . | . | . | . | 360 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | I | R | A | K | A | S | Q | L | D | E | A | R | R |
Query Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |
|   |   |   |   |   |   |   |   |
Template Sequence |   |
K | I | T | A | I | L | D | S | L | P | P | S | D | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | S |
| T | T | T |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
126 | . | . | . | 130 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|