Job Description P62620 Confidence 91.61% Date Thu Jan 5 12:07:43 GMT 2012 Rank 203 Aligned Residues 227 % Identity 14% Template c3chvA_ PDB info PDB header:metal binding protein Chain: A: PDB Molecule:prokaryotic domain of unknown function (duf849) with a tim PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 member (spoa0042) from silicibacter pomeroyi dss-3 at 1.45 a3 resolution Resolution 1.45 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40									.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.										.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.
Predicted Secondary structure															.	.					.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.													.
Query SS confidence															.	.					.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.													.
Query Sequence		D	G	A	P	I	A	V	Q	S	M	T	N	T	.	.	R	T	T	D	.	.	.	.	.	.	.	.	V	E	A	T	V	N	Q	I	K	A	L	E	R	V	G	A	D	I	V	R	V	S	V	P	T	M	D	.	.	.	.	.	.	.	.	.	A	A	E	A	F	K	L	I	K	Q	Q	V	.	N	V	P	L
Query Conservation															.	.					.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.													.
Alig confidence															.	.					.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.													.
Template Conservation
Template Sequence		A	N	K	P	C	I	I	C	V	A	I	T	G	S	V	P	T	K	A	D	N	P	A	V	P	I	T	V	S	E	Q	V	E	S	T	Q	E	A	F	E	A	G	A	A	I	A	H	C	H	V	R	N	D	D	G	T	P	S	S	D	P	D	R	F	A	R	L	T	E	G	L	H	T	H	C	P	G	X	I	V
Template Known Secondary structure						B									S	S			T	T	T		T	T				S															T											T	T	S																				S	T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		84	.	.	.	.	.	90	.				.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.							.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure										.	.	.																				.	.					.	.	.	.	.	.
Query SS confidence										.	.	.																				.	.					.	.	.	.	.	.
Query Sequence		V	A	D	I	H	F	D	Y	.	.	.	R	I	A	L	K	V	A	E	Y	G	V	D	C	L	R	I	N	P	G	.	.	N	I	G	N	.	.	.	.	.	.	E	E	R	I	R	M	V	V	D	C	A	R	D	K	N	I	P	I	R	I	G	V	N	A	G	S	L	E	K	D	L	Q	E	K	Y	G	E	P
Query Conservation										.	.	.																				.	.					.	.	.	.	.	.
Alig confidence										.	.	.																				.	.					.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.				.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.				.
Template Sequence		Q	F	S	T	G	G	R	S	G	A	G	Q	A	R	G	G	X	L	P	L	K	P	D	X	A	S	L	S	V	G	S	N	N	F	P	S	R	V	Y	E	N	P	P	D	L	V	D	W	L	A	A	Q	X	R	S	Y	R	V	T	P	E	I	E	A	.	.	.	.	.	.	.	.	.	.	.	.	F	D	L	.
Template Known Secondary structure							T	T	T			G	G	G	G	G	T	T	G	G	G			S							S					S	S	S																				T								.	.	.	.	.	.	.	.	.	.	.	.	S	S		.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.				.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.													.	150	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.
Query SS confidence																														.	.	.	.
Query Sequence		T	P	Q	A	L	L	E	S	A	M	R	H	V	D	H	L	D	R	L	N	F	D	Q	F	K	V	S	V	.	.	.	.	K	A	S	D	V	F	L	A	V	E	S	Y	R	L	L	A	K	Q	I	D	Q	P	L	H	L	G	I	T	E	A	G	G	A	R	S	G	A	V	K	S	A	I	G	L	G	L	L	L
Query Conservation																														.	.	.	.
Alig confidence		.	.	.																										.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	S	H	I	L	R	A	I	D	X	H	G	R	G	L	L	Y	G	K	L	Y	V	Q	F	V	X	G	V	K	N	A	X	P	A	D	R	E	V	F	D	F	Y	V	R	X	X	R	T	R	A	P	Q	A	E	W	C	A	A	G	I	G	A	N	Q	L	T	V	N	E	W	A	I	A	A	G	G	H	T
Template Known Secondary structure		.	.	.												T	T		S		S	S										T	T	S																				T	T	S								T	T												T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		S	E	G	I	G	D	T	L	R	V	.	.	.	S	L	A	A	D	P	V	E	E	I	K	V	G	F	D	I	L	K	S	L	R	I	R	S	R	G	I	N
Query Conservation												.	.	.
Alig confidence												.	.	.
Template Conservation
Template Sequence		R	T	G	L	E	D	N	I	R	L	D	R	Q	T	L	A	P	S	N	A	A	L	V	R	R	S	V	E	L	C	D	K	Y	Q	R	P	V	A	S	W	Q
Template Known Secondary structure				S	T	T	T			B	S	S	S	S		B																		T	T			B
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions