Job Description P62620 Confidence 98.68% Date Thu Jan 5 12:07:43 GMT 2012 Rank 33 Aligned Residues 243 % Identity 13% Template c3bolB_ PDB info PDB header:transferase Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+ Resolution 1.85 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.											.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.																																.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.																																.	.	.
Query Sequence		H	N	Q	A	P	I	Q	R	R	K	S	T	R	I	Y	V	G	N	V	P	I	G	D	G	A	P	I	A	V	Q	S	M	T	N	T	R	.	.	.	.	.	.	.	.	.	.	T	T	D	V	E	A	T	V	N	Q	I	K	A	L	E	R	V	G	A	D	I	V	R	V	S	V	P	T	M	D	A	.	.	.
Query Conservation																																						.	.	.	.	.	.	.	.	.	.																																.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.																																.	.	.
Template Conservation
Template Sequence		R	K	P	L	Q	R	K	K	K	R	I	F	A	V	S	S	P	S	K	L	V	T	F	D	H	F	V	V	I	G	E	R	I	N	P	A	G	R	K	K	L	W	A	E	M	Q	K	G	N	E	E	I	V	I	K	E	A	K	T	Q	V	E	K	G	A	E	V	L	D	V	N	F	G	I	E	S	Q	I	D	V
Template Known Secondary structure																		S	S					S	S	S											T	T										T	T															T	T		S							S	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
					69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	A	E	A	F	K	L	I	K	Q	Q	V	N	V	P	L	V	A	D	I	H	F	D	Y	R	I	A	L	K	V	A	E	Y	G	V	D	C	L	R	I	N	P	G	N	I	G	N	E	E	R	I	R	M	V	V	D	C	A	R	D	K	N	I	P	I	R	I	G	V	N	A	G	S	L	E	K	D	L
Query Conservation		.	.	.
Alig confidence		.	.	.																				.																								.																												.	.	.	.	.	.
Template Conservation																								.																								.																												.	.	.	.	.	.
Template Sequence		R	Y	V	E	K	I	V	Q	T	L	P	Y	V	S	N	V	P	L	S	L	D	I	.	Q	N	V	D	L	T	E	R	A	L	R	A	Y	P	G	R	S	L	F	N	S	A	K	.	V	D	E	E	E	L	E	M	K	I	N	L	L	K	K	Y	G	G	T	L	I	V	L	L	M	G	K	.	.	.	.	.	.
Template Known Secondary structure															T		S							.														S	S									.	S																							S		S	S	.	.	.	.	.	.
Template Predicted Secondary structure																								.																								.																												.	.	.	.	.	.
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.							.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.									.	.	.	.	.	.
Query SS confidence																														.									.	.	.	.	.	.
Query Sequence		Q	E	K	Y	G	E	P	T	P	Q	A	L	L	E	S	A	M	R	H	V	D	H	L	D	R	L	N	F	.	D	Q	F	K	V	S	V	K	.	.	.	.	.	.	A	S	D	V	F	L	A	V	E	S	Y	R	L	L	A	K	Q	I	D	Q	P	L	H	L	G	I	T	E	A	G	G	A	R	S	G	A	V
Query Conservation																														.									.	.	.	.	.	.
Alig confidence		.	.	.																										.									.	.	.	.	.	.																	.
Template Conservation		.	.	.																																																									.
Template Sequence		.	.	.	D	V	P	K	S	F	E	E	R	K	E	Y	F	E	K	A	L	K	I	L	E	R	H	D	F	S	D	R	V	I	F	D	P	G	V	L	P	L	G	A	E	G	K	P	V	E	V	L	K	T	I	E	F	I	S	S	.	K	G	F	N	T	T	V	G	L	S	N	L	S	F	L	P	D	R	S	Y
Template Known Secondary structure		.	.	.	S				S																		T	T		T	T	S										G	G	G	T																.	T	T			B			B	G	G	G	T	T				S
Template Predicted Secondary structure		.	.	.																																																									.
Template SS confidence
					442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.		.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	A	I	G	L	G	L	L	L	S	E	G	I	G	D	T	L	R	V	S	L	A	A	D	P	V	E	E	I	K	V	G	F	D	I	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	N	T	A	F	L	V	L	G	I	S	K	G	L	S	S	A	I	M	N	P	L	D	E	T	L	M	K	T	L	N	A	T	L	V	I	L	E
Template Known Secondary structure													T	T								T	T															T	T
Template Predicted Secondary structure
Template SS confidence
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions