Job Description P62620 Confidence 61.03% Date Thu Jan 5 12:07:43 GMT 2012 Rank 364 Aligned Residues 121 % Identity 20% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.																	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																							.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	P	I	A	V	Q	S	M	T	N	T	R	T	T	D	V	E	A	T	V	N	Q	I	K	A	L	E	R	V	G	A	D	I	V	R	V	.	.	S	V	P	T	M	D	A	A	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	L	I	K	Q	Q	V	N	V	P	L	V	A	D
Query Conservation																																							.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.																					.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.
Template Sequence		E	H	P	I	A	L	Q	L	A	G	S	D	P	.	.	.	.	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K
Template Known Secondary structure		G		S								S			.	.	.	.													T	T		S										S							T		G	G	G	G	G	G														T	T		S	S
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		87	.	.	90											.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110											.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query Sequence		I	H	F	D	.	.	.	.	.	.	.	.	.	.	Y	R	I	A	L	K	V	A	E	Y	G	V	D	C	L	R	I	N	P	G	.	.	.	.	.	.	.	.	.	.	N	I	G	N	E	E	R	I	R	M	V	V	D	C	A	R	D	K	N	I	P	I	R	I	G	V	N	A	G	S	L	E	K	D	L	Q
Query Conservation						.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	R	L	G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A
Template Known Secondary structure				S		B	T	T																	T	T									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S			S
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		147	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		213	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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