Job Description P62620 Confidence 100.00% Date Thu Jan 5 12:07:43 GMT 2012 Rank 2 Aligned Residues 348 % Identity 39% Template c2y0fD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27 Resolution 2.50 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.						.	80	.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.
Query Sequence		R	R	K	S	T	R	I	Y	V	G	N	V	P	I	G	D	G	A	P	I	A	V	Q	S	M	T	N	T	R	T	T	D	V	E	A	T	V	N	Q	I	K	A	L	E	R	V	G	A	D	I	V	R	V	S	V	P	T	M	D	A	A	E	A	F	K	L	I	K	Q	Q	.	.	.	.	.	V	N	V	P	L
Query Conservation																																																																								.	.	.	.	.
Alig confidence																																																																								.	.	.	.	.
Template Conservation
Template Sequence		R	R	P	T	P	T	V	Y	V	G	R	V	P	I	G	G	A	H	P	I	A	V	Q	S	M	T	N	T	P	T	R	D	V	E	A	T	T	A	Q	V	L	E	L	H	R	A	G	S	E	I	V	R	L	T	V	N	D	E	E	A	A	K	A	V	P	E	I	K	R	R	L	L	A	E	G	V	E	V	P	L
Template Known Secondary structure											T	T				S	T	T	S										S		T	T															T	T		S								S					T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.				.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure															.	.	.																																																									.	.	.	.	.	.	.	.
Query SS confidence															.	.	.																																																									.	.	.	.	.	.	.	.
Query Sequence		V	A	D	I	H	F	D	Y	R	I	A	L	K	.	.	.	V	A	E	Y	G	V	D	C	L	R	I	N	P	G	N	I	G	N	E	E	R	I	R	M	V	V	D	C	A	R	D	K	N	I	P	I	R	I	G	V	N	A	G	S	L	E	K	D	L	Q	E	K	Y	G	E	P	.	.	.	.	.	.	.	.
Query Conservation															.	.	.																																																									.	.	.	.	.	.	.	.
Alig confidence															.	.	.																		.	.	.	.	.	.																																		.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.
Template Sequence		V	G	D	F	H	F	N	G	H	L	L	L	R	K	Y	P	K	M	A	E	A	L	D	K	F	R	I	N	P	E	H	F	A	.	.	.	.	.	.	E	M	I	R	I	A	M	D	L	G	K	P	V	R	I	G	A	N	W	G	S	L	D	P	A	L	L	T	E	L	M	D	R	N	A	S	R	P	E	P	K
Template Known Secondary structure						S	S																	S								T	T		.	.	.	.	.	.								T	T	T									G	G	G	S															S	S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.							.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
							153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																						.	.
Query SS confidence		.	.	.	.	.																						.	.
Query Sequence		.	.	.	.	.	T	P	Q	A	L	L	E	S	A	M	R	H	V	D	H	L	D	R	L	N	F	.	.	D	Q	F	K	V	S	V	K	A	S	D	V	F	L	A	V	E	S	Y	R	L	L	A	K	Q	I	D	Q	P	L	H	L	G	I	T	E	A	G	G	A	R	S	G	A	V	K	S	A	I	G	L	G
Query Conservation		.	.	.	.	.																						.	.
Alig confidence		.	.	.	.	.																						.	.
Template Conservation
Template Sequence		S	A	H	E	V	V	L	E	A	L	V	E	S	A	V	R	A	Y	E	A	A	L	E	M	G	L	G	E	D	K	L	V	L	S	A	K	V	S	K	A	R	D	L	V	W	V	Y	R	E	L	A	R	R	T	Q	A	P	L	H	L	G	L	T	E	A	G	M	G	V	K	G	I	V	A	S	A	A	A	L	A
Template Known Secondary structure																													G	G	G							B	S	S																	S		B				B					S	S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.					.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.													280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	L	S	E	G	I	G	D	T	L	R	V	S	L	A	A	D	P	V	E	.	.	.	.	E	I	K	V	G	F	D	I	L	K	S	L	R	I	R	S	R	G	I	N	F	I	A	C	P	T	C	S	R	Q	E	F	D	.	.	.	.	.	.	.	.	.	.	.	.	V	I	G	T	V	N	A	L	E	Q
Query Conservation																							.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	L	L	E	G	I	G	D	T	I	R	V	S	L	T	P	S	P	K	E	P	R	T	K	E	V	E	V	A	Q	E	I	L	Q	A	L	G	L	R	A	F	A	P	E	V	T	S	C	P	G	C	G	R	T	T	S	T	F	F	Q	E	L	A	E	E	V	S	R	R	L	K	E	R	L	P	E	W	R	A
Template Known Secondary structure							T			S									S	T	T			T	T												T	T	T	S	S		S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320					.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																																	.	.	.	.
Query SS confidence																																	.	.	.	.
Query Sequence		R	L	E	D	I	I	T	P	M	D	V	S	I	I	G	C	V	V	N	G	P	G	E	A	L	V	S	T	L	G	V	.	.	.	.	T	G	G	N	K	K	S	G	L	Y	E	D	G	V	R	K	D	R	L	D	N	N	D	M	I	D	Q	L	E	A	R	I	R	A	K	A	S	Q	L	D	E	A	R
Query Conservation																																	.	.	.	.
Alig confidence								.																									.	.	.	.
Template Conservation								.
Template Sequence		R	Y	P	G	V	E	.	E	L	K	V	A	V	M	G	C	V	V	N	G	P	G	E	S	K	H	A	H	I	G	I	S	L	P	G	A	G	E	E	P	K	A	P	V	Y	A	D	G	K	L	L	T	I	L	K	G	E	G	I	A	E	E	F	L	R	L	V	E	D	Y	V	K	T	R	F	A	P	K
Template Known Secondary structure				T	T	G	G	.	G							S		T	T	T	T	G	G	G	G	T	T		S								T	T			S						S	S	S								S	T	T																	S	S	S
Template Predicted Secondary structure								.
Template SS confidence
		329	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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