Job Description P62620 Confidence 68.79% Date Thu Jan 5 12:07:43 GMT 2012 Rank 327 Aligned Residues 157 % Identity 17% Template c1ydnA_ PDB info PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of the hmg-coa lyase from brucella melitensis,2 northeast structural genomics target lr35. Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.								.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																								.	.	.	.	.	.	.																																																	.	.	.
Query SS confidence																								.	.	.	.	.	.	.																																																	.	.	.
Query Sequence		V	E	A	T	V	N	Q	I	K	A	L	E	R	V	G	A	D	I	V	R	V	S	.	.	.	.	.	.	.	V	P	T	M	D	A	A	E	A	F	K	L	I	K	Q	Q	V	N	V	P	L	V	A	D	I	H	F	D	Y	R	I	A	L	K	V	A	E	Y	G	V	D	C	L	R	I	N	P	G	.	.	.
Query Conservation																								.	.	.	.	.	.	.																																																	.	.	.
Alig confidence																								.	.	.	.	.	.	.																																																	.	.	.
Template Conservation
Template Sequence		T	A	D	K	I	A	L	I	N	R	L	S	D	C	G	Y	A	R	I	E	A	T	S	F	V	S	P	K	W	V	P	Q	L	A	D	S	R	E	V	X	A	G	I	R	R	A	D	G	V	R	Y	S	V	L	V	P	N	X	K	G	Y	E	A	A	A	A	A	H	A	D	E	I	A	V	F	I	S	A	S	E
Template Known Secondary structure													T	T	T	T		S								S		T	T	T		G	G	G	T	T								S				S	S	S							S	S										T	T		S								S
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
							111	.	.	.						.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.					.	.	.	.	.																																																																		.
Query SS confidence		.	.	.	.	.					.	.	.	.	.																																																																		.
Query Sequence		.	.	.	.	.	N	I	G	N	.	.	.	.	.	E	E	R	I	R	M	V	V	D	C	A	R	D	K	N	I	P	I	R	I	G	V	N	A	G	S	L	E	K	D	L	Q	E	K	Y	G	E	P	T	P	Q	A	L	L	E	S	A	M	R	H	V	D	H	L	D	R	L	N	F	D	Q	F	K	V	S	.
Query Conservation		.	.	.	.	.					.	.	.	.	.																																																																		.
Alig confidence		.	.	.	.	.					.	.	.	.	.																															.	.	.	.																.	.	.	.													.
Template Conservation																																														.	.	.	.																.	.	.	.
Template Sequence		G	F	S	K	A	N	I	N	C	T	I	A	E	S	I	E	R	L	S	P	V	I	G	A	A	I	N	D	G	L	A	I	R	G	Y	V	S	C	V	V	E	C	P	Y	.	.	.	.	D	G	P	V	T	P	Q	A	V	A	S	V	T	E	Q	.	.	.	.	L	F	S	L	G	C	H	E	V	S	L	G	D
Template Known Secondary structure								T	S	S																			T	T										S	S			T	T	.	.	.	.	T															.	.	.	.					T		S
Template Predicted Secondary structure																																														.	.	.	.																.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.	.	.	160	.	.	.					.	.	.	.	.	.	170	.	.	.	.	.	.
			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.
Predicted Secondary structure		.																					.
Query SS confidence		.																					.
Query Sequence		.	V	K	A	S	D	V	F	L	A	V	E	S	Y	R	L	L	A	K	Q	I	.	D	Q	P	L	H	L
Query Conservation		.																					.
Alig confidence		.																					.
Template Conservation
Template Sequence		T	I	G	R	G	T	P	D	T	V	A	A	X	L	D	A	V	L	A	I	A	P	A	H	S	L	A	G
Template Known Secondary structure		T	T	S																T	T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions