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Job DescriptionP32689
Confidence52.03%DateThu Jan 5 11:50:13 GMT 2012
Rank9Aligned Residues140
% Identity16%Templatec2jmmA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   47..50....... ..60.........70.........80.........90.........100.........110........
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Query Sequence  MAREGELSLNY. . . . . . . . RDNDQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESY
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Template Sequence  MPKDNTWYTGAKLGWSQYSRENQLGAGAFGGYQVNPYVGFEMGYDWLGRMP. . . . . . . . RKAQGVQLTAKLGYPKLGTDD
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   1........10.........20.........30.........40.........50. ........60.........70..
 
   119120........ .130.........140.........150.........160.........170.........180.........190......
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Query Sequence  WLPQVAVGAR. . DIGGTGLFDAEYLVASKAWGPFDFTLGLGWGYLGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQM
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Template Sequence  LDIYTRLGGMVWRADTSDKDGNGYISAAEASVSPVFAGGVEYV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   73......80.........90.........100.........110.....
 
   197..200.........210.........220.........230.........240.........
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Query Sequence  FHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSKFNVGAIYRV
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Template Sequence  . . . . . . . . . . IRRRIT. PEIATRLEYQWTN. . . . . . . NASDNGMLSLGVSYRF
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   116...120. ........130.... .....140.........150
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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