Job Description P0AB85 Confidence 100.00% Date Thu Jan 5 11:14:52 GMT 2012 Rank 1 Aligned Residues 307 % Identity 97% Template c2o18A_ PDB info PDB header:lipid binding protein Chain: A: PDB Molecule:thiamine biosynthesis lipoprotein apbe; PDBTitle: crystal structure of a thiamine biosynthesis lipoprotein2 apbe, northeast strcutural genomics target er559 Resolution 2.20 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	V	T	V	L	E	G	K	T	M	G	T	F	W	R	A	S	I	P	G	I	D	A	K	R	S	A	E	L	K	E	K	I	Q	T	Q	L	D	A	D	D	Q	L	L	S	T	Y	K	K	D	S	A	L	M	R	F	N	D	S	Q	S	L	S	P	W	P	V	S	E	A	M	A	D	I	V	T	T	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	V	T	V	L	E	G	K	T	X	G	T	F	W	R	A	S	I	P	G	I	D	A	K	R	S	A	E	L	K	E	K	I	Q	T	Q	L	D	A	D	D	Q	L	L	S	T	Y	K	K	D	S	A	L	X	R	F	N	D	S	Q	S	L	S	P	W	P	V	S	E	A	X	A	D	I	V	T	T	S	L
Template Known Secondary structure												T	T									S																										S	S	S	T	T	S												S
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	G	A	K	T	D	G	A	M	D	I	T	V	G	P	L	V	N	L	W	G	F	G	P	E	Q	Q	P	V	Q	I	P	S	Q	E	Q	I	D	A	M	K	A	K	T	G	L	Q	H	L	T	V	I	N	Q	S	H	Q	Q	Y	L	Q	K	D	L	P	D	L	Y	V	D	L	S	T	V	G	E	G	Y	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	G	A	K	T	D	G	A	X	D	I	T	V	G	P	L	V	N	L	W	G	F	G	P	E	Q	Q	P	V	Q	I	P	S	Q	E	Q	I	D	A	X	K	A	K	T	G	L	Q	H	L	T	V	I	N	Q	S	H	Q	Q	Y	L	Q	K	D	L	P	D	L	Y	V	D	L	S	T	V	G	E	G	Y	A
Template Known Secondary structure							T	T	T		S		T	T									T		S	T	T										T	T						T	T			G	G	G							S	S							S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	H	L	A	R	L	M	E	Q	E	G	I	S	R	Y	L	V	S	V	G	G	A	L	N	S	R	G	M	N	G	E	G	L	P	W	R	V	A	I	Q	K	P	T	D	K	E	N	A	V	Q	A	V	V	D	I	N	G	H	G	I	S	T	S	G	S	Y	R	N	Y	Y	E	L	D	G	K	R	L	S	H
Query Conservation
Alig confidence																																																	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.																			.	.	.	.	.	.	.
Template Sequence		A	D	H	L	A	R	L	X	E	Q	E	G	I	S	R	Y	L	V	S	V	G	G	A	L	N	S	R	G	X	N	G	E	G	L	P	W	R	V	A	I	Q	K	P	T	D	K	Q	.	.	.	.	A	V	V	D	I	N	G	H	G	I	S	T	S	G	S	Y	R	N	.	.	.	.	.	.	.	R	L	S	H
Template Known Secondary structure												T	T									T	T						S	B		S	S	S	S	B													.	.	.	.						B	T												.	.	.	.	.	.	.
Template Predicted Secondary structure																																																	.	.	.	.																			.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.								.	.	240	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	D	P	Q	T	G	R	P	I	E	H	N	L	V	S	V	T	V	I	A	P	T	A	L	E	A	D	A	W	D	T	G	L	M	V	L	G	P	E	K	A	K	E	V	V	R	R	E	G	L	A	V	Y	M	I	T	K	E	G	D	S	F	K	T	W	M	S	P	Q	F	K	S	F	L	V	S	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	D	P	Q	T	G	R	P	I	E	H	N	L	V	S	V	T	V	I	A	P	T	A	L	E	A	D	A	W	D	T	G	L	X	V	L	G	P	E	K	A	K	E	V	V	R	R	E	G	L	A	V	Y	X	I	T	K	E	G	D	S	F	K	T	W	X	S	P	Q	F	K	S	F	L	V	S	E
Template Known Secondary structure			B		T	T	T	S	S	B			S										S	S																											T									S	S	S												T	T	B
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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