Job Description P27253 Confidence 23.79% Date Thu Jan 5 11:43:33 GMT 2012 Rank 493 Aligned Residues 186 % Identity 18% Template d8ruca1 SCOP info TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Resolution 1.60

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		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	L	I	D	Q	G	K	R	V	I	V	G	V	N	K	Y	K	L	D	H	E	D	E	T	D	V	L	E	I	D	N	V	M	V	R	N	E	Q	I	A	S	L	E	R	I	R	A	T	R	D	D	A	A	V	T	A	A	L	N	A	L	T	H	A	A	Q	H	N	E	N	L	L	A	A	A	V	N	A	A
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	D	K	L	N	K	Y	G	R	P	L	L	G	C	T	I	K	P	K	L	G	L	S	A	K	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T			S	S								S	S	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		523	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.		.	.	.	.	590	.	.	.	.	.		.	.	.	.	600
Predicted Secondary structure																																																																	.											.
Query SS confidence																																																																	.											.
Query Sequence		R	V	R	A	T	L	G	E	I	S	D	A	L	E	V	A	F	D	R	Y	L	V	P	S	Q	C	V	T	G	V	I	A	Q	S	Y	H	Q	S	E	K	S	A	S	E	F	D	A	I	V	A	Q	T	E	Q	F	L	A	D	N	G	R	R	P	.	R	I	L	I	A	K	M	G	Q	D	.	G	H	D	R	G
Query Conservation																																																																	.											.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																																				.											.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	Y	G	R	A	V	Y	E	C	L	R	G	G	L	D	F	T	D	D	E	N	V	N	S	Q	P	F	M	R	W	R	D	R	F	L	F	C	A	E	A	L	Y	K	A	Q	A	E	T	G	E	I	K	G	H	Y	L	N	A	T	A	G	T	C	E	D	M	M	K	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.											T	T		S	B				T	T		S	S	B	T	T	B																					S	S			B								S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		601	.	.	.	.	.	.									.	.	610	.	.	.	.	.	.																												.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	K	V	I	A	S	A	.	.	.	.	.	.	.	.	Y	S	D	L	G	F	D	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	P	M	F	S	T	P	E	E	I	A	R	L	A	V	E	N	D	V	H	V	V	G	A	S	S	L	A
Query Conservation									.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																																																														.
Template Sequence		A	V	F	A	R	E	L	G	V	P	I	V	M	H	D	Y	L	T	G	G	F	T	A	N	T	T	L	S	H	Y	C	R	D	N	G	L	L	L	H	I	H	R	A	M	H	A	V	I	D	R	Q	K	N	H	G	M	H	F	R	V	.	L	A	K	A	L	R	L	S	G	G	D	H	I	H	S	G	T	V	V
Template Known Secondary structure									T		S																									T								T	T						S		S	S	S	S						.											S							S	S
Template Predicted Secondary structure																																																														.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		646	.	.	.	650	.	.	.	.	.				.	.	.	.	660	.																			.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.
Predicted Secondary structure												.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	H	K	T	L	I	P	E	L	.	.	.	V	E	A	L	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	G	R	E	D	I	C	V	V	A	G	G	V	I	P	P	Q	D	Y	A	F	L	Q	E	R	G	V	A	A	I	Y	G	P	G
Query Conservation												.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	L	E	G	E	R	D	I	T	L	G	F	V	D	L	L	R	D	D	Y	T	E	K	D	R	S	R	G	I	Y	F	T	Q	S	W	V	S	T	P	G	V	L	P	V	A	S	G	G	I	H	V	W	H	M	P	A	L	T	E	I	F	G	D	D	S	V	L	Q	F	G
Template Known Secondary structure		S	S	S																	S					B	G	G	G	T	B		S					T	T										S	S			G	G	G										S	S	S					S
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions