Job Description P27253 Confidence 100.00% Date Thu Jan 5 11:43:33 GMT 2012 Rank 5 Aligned Residues 436 % Identity 26% Template d7reqb1 SCOP info TIM beta/alpha-barrel Cobalamin (vitamin B12)-dependent enzymes Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain Resolution 2.20

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.										.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.
Query Sequence		S	N	V	Q	E	W	Q	Q	L	A	N	K	E	L	S	R	R	E	K	T	V	.	.	.	.	.	.	.	.	.	D	S	L	V	H	Q	T	A	E	G	I	A	I	K	P	L	Y	T	E	A	D	L	D	N	L	E	V	T	G	T	L	P	G	L	P	P	Y	V	R	G	P	R	A	T	M	Y	T	A	Q	P
Query Conservation																							.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation																																																								.	.	.
Template Sequence		A	T	E	E	Q	W	E	R	E	V	E	K	V	L	N	R	G	R	P	P	E	K	Q	L	T	F	A	E	C	L	K	R	L	T	V	H	T	V	D	G	I	D	I	V	P	M	Y	R	P	K	D	A	P	K	.	.	.	K	L	G	Y	P	G	V	A	P	F	T	R	G	T	T	V	R	N	G	D	M	D	A
Template Known Secondary structure																	T	T			T	T	S																T	T	S					S				G	G	G	S		S	.	.	.	S				T	T	S	T	T		T	T		S	S				S		S
Template Predicted Secondary structure																																																								.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.				.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	T	I	R	Q	Y	A	G	F	S	T	A	K	E	S	N	A	F	Y	R	R	N	L	A	A	G	Q	K	G	L	S	V	A	F	D	L	A	T	H	R	G	Y	D	S	D	N	P	R	V	A	G	D	V	G	K	A	G	V	A	I	D	T	V	E	D	M	K	V	L	F	D	Q	I	P	L	D	K	M	S	V
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	D	V	R	A	L	H	E	D	P	D	E	K	F	T	R	K	A	I	L	E	G	L	E	R	G	V	T	S	L	L	L	R	V	D	P	D	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	E	H	L	D	E	V	L	S	D	V	L	L	E	M	T	K	V
Template Known Secondary structure		S									S															T	T								B	S	T	T	S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G					T	T	T			T	T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.																							.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	T	M	N	G	A	V	L	P	V	L	A	F	Y	I	V	A	A	E	E	Q	G	V	T	P	D	K	L	T	G	T	I	Q	N	D	I	L	K	E	Y	L	C	R	N	T	Y	I	Y	P	P	K	P	S	M	R	I	I	A	D	I	I	A	W	C	S	G	N	M	P	R	F	N	T	I	S	I	S	G	Y
Query Conservation
Alig confidence																																																.	.	.	.	.
Template Conservation																																																.	.	.	.	.
Template Sequence		E	V	F	S	R	Y	D	Q	G	A	A	A	E	A	L	V	S	V	Y	E	R	S	D	K	P	A	K	D	L	A	L	N	L	G	L	D	P	I	G	F	A	A	L	Q	G	T	.	.	.	.	.	E	P	D	L	T	V	L	G	D	W	V	R	R	L	A	K	F	S	P	D	S	R	A	V	T	I	D	A	N
Template Known Secondary structure						S	S															T		S	S		G	G	G																	T	S	.	.	.	.	.					T	T									T	T	S		T	T								T
Template Predicted Secondary structure																																																.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210						.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	M	G	E	A	G	A	N	C	V	Q	Q	V	A	F	T	L	A	D	G	I	E	Y	I	K	A	A	I	S	A	G	L	K	I	D	D	F	A	P	R	L	S	F	F	F	G	I	G	M	D	L	F	M	N	V	A	M	L	R	A	A	R	Y	L	W	S	E	A	V	S	G	F	G	A	Q	D	P	K	S	L
Query Conservation
Alig confidence																																																																															.
Template Conservation																																																																															.
Template Sequence		I	Y	H	N	A	G	A	G	D	V	A	E	L	A	W	A	L	A	T	G	A	E	Y	V	R	A	L	V	E	Q	G	F	T	A	T	E	A	F	D	T	I	N	F	R	V	T	A	T	H	D	Q	F	L	T	I	A	R	L	R	A	L	R	E	A	W	A	R	I	G	E	V	F	G	V	D	E	D	.	K	R
Template Known Secondary structure						T	T																								T	T								T	T									S																							T	T			G	G	.	G
Template Predicted Secondary structure																																																																															.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		A	L	R	T	H	C	Q	T	S	G	W	S	L	T	E	Q	D	P	Y	N	N	V	I	R	T	T	I	E	A	L	A	A	T	L	G	G	T	Q	S	L	H	T	N	A	F	D	E	A	L	G	L	P	.	T	D	F	S	A	R	I	A	R	N	T	Q	I	I	I	Q	E	E	S	E	L	C	R	T	V	D	P
Query Conservation																																																						.
Alig confidence																																																						.
Template Conservation
Template Sequence		G	A	R	Q	N	A	I	T	S	W	R	E	L	T	R	E	D	P	Y	V	N	I	L	R	G	S	I	A	T	F	S	A	S	V	G	G	A	E	S	I	T	T	L	P	F	T	Q	A	L	G	L	P	E	D	D	F	P	L	R	I	A	R	N	T	G	I	V	L	A	E	E	V	N	I	G	R	V	N	D	P
Template Known Secondary structure											S	T	T			S	S	S	T	T																T	T		S							T	T	T	T	T				S	S	S																T	S		T	T	S	S	S		T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	G	S	Y	Y	I	E	S	L	T	D	Q	I	V	K	Q	A	R	A	I	I	Q	Q	I	D	E	A	G	G	M	A	K	A	I	E	A	G	L	P	K	R	M	I	E	E	A	S	A	R	E	Q	S	L	I	D	Q	G	K	R	V	I	V	G	V	N	K	Y	K	L	D	H	E	D	E	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	G	S	Y	Y	V	E	S	L	T	R	S	L	A	D	A	A	W	K	E	F	Q	E	V	E	K	L	G	G	M	S	K	A	V	M	T	E	H	V	T	K	V	L	D	A	C	N	A	E	R	A	K	R	L	A	N	R	K	Q	P	I	T	A	V	S	E	F	P	M	I	G	A	R	S	I	E
Template Known Secondary structure		T	T	T																									T	T								S	S																			T	T	S	S			B	T	T	T	B	S			T	T
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.