Job Description P27253 Confidence 62.66% Date Thu Jan 5 11:43:33 GMT 2012 Rank 224 Aligned Residues 327 % Identity 14% Template d1xrsa_ SCOP info TIM beta/alpha-barrel Cobalamin (vitamin B12)-dependent enzymes D-lysine 5,6-aminomutase alpha subunit, KamD Resolution 2.80

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		M	Y	T	A	Q	P	W	T	I	R	Q	Y	A	G	F	S	T	A	K	E	S	N	A	F	Y	R	R	N	L	A	A	G	Q	K	G	L	S	V	A	F	D	L	A	T	.	H	R	G	Y	D	S	D	N	P	R	V	A	G	D	V	G	K	A	G	V	A	I	D	T	V	E	D	M	K	V	L	F	D	Q	I
Query Conservation																																														.
Alig confidence										.																																				.														.	.	.	.
Template Conservation										.																																																		.	.	.	.
Template Sequence		G	D	K	S	G	P	L	L	.	Y	V	I	V	A	T	G	N	I	Y	E	D	I	T	Q	A	V	A	A	A	K	Q	G	A	D	V	I	A	V	I	R	T	T	G	Q	S	L	L	D	Y	V	P	Y	G	A	T	T	E	G	.	.	.	.	F	G	G	T	Y	A	T	Q	E	N	F	R	L	M	R	E	A	L
Template Known Secondary structure					S	S				.							S															T	T		S								T	T	G	G	G		S	S				S			S			.	.	.	.	T	T	S
Template Predicted Secondary structure										.																																																		.	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		146	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.
Query Sequence		P	L	.	.	.	.	.	.	D	K	M	S	V	S	M	T	M	N	G	A	V	L	P	V	L	A	F	Y	I	V	A	A	E	E	Q	G	V	T	P	D	K	L	T	G	T	I	Q	N	D	I	L	K	E	Y	L	C	R	N	T	Y	I	Y	P	P	K	P	S	M	R	I	I	A	D	I	I	A	W	C	S	G
Query Conservation				.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.																							.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Sequence		D	K	V	G	A	E	V	G	K	Y	I	R	L	C	N	Y	C	S	G	L	C	M	P	E	I	A	A	M	G	A	.	.	.	.	.	.	.	.	I	E	R	L	D	V	M	L	N	D	A	L	Y	G	I	L	F	R	.	.	.	.	.	.	.	.	D	I	N	M	Q	R	T	M	I	D	Q	N	F	S	R	I
Template Known Secondary structure									T	S										S	T	T										.	.	.	.	.	.	.	.			T		S						S	S							.	.	.	.	.	.	.	.		B
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250									.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.									.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	M	P	R	F	N	T	I	S	I	S	G	Y	H	M	G	E	A	G	A	N	C	V	Q	Q	V	A	F	T	L	A	D	G	I	E	Y	I	K	A	A	I	S	A	G	L	K	I	D	D	F	A	P	R	L	S	F	F	F	G	I	G	M	D	L	F	M	N	V	A	M	L	R	A	A	R	Y	L	W	S	E
Query Conservation
Alig confidence																																																			.	.	.	.											.	.
Template Conservation																																																			.	.	.	.											.	.
Template Sequence		I	N	G	F	A	G	V	I	I	N	T	G	E	D	N	Y	L	T	T	A	D	A	F	E	E	A	H	T	V	L	A	S	Q	F	I	N	E	Q	F	A	L	L	A	G	L	P	E	E	Q	.	.	.	.	M	G	L	G	H	A	F	E	M	D	.	.	P	E	L	K	N	G	F	L	Y	E	L	S	Q	A	Q
Template Known Secondary structure						T	T							T					S	S	S		T	T	T	S																		T	T			G	G	G	.	.	.	.									S		.	.	T	T	S	T	T
Template Predicted Secondary structure																																																			.	.	.	.											.	.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.					.	.	.	.	.	.	340	.	.	.			.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.
Predicted Secondary structure												.																																																																	.
Query SS confidence												.																																																																	.
Query Sequence		A	V	S	G	F	G	A	Q	D	P	.	K	S	L	A	L	R	T	H	C	Q	T	S	G	W	S	L	T	E	Q	D	P	Y	N	N	V	I	R	T	T	I	E	A	L	A	A	T	L	G	G	T	Q	S	L	H	T	N	A	F	D	E	A	L	G	L	P	T	D	F	S	A	R	I	A	R	.	N	T	Q	I
Query Conservation												.																																																																	.
Alig confidence												.																											.	.	.	.	.	.	.	.																															.
Template Conservation																																							.	.	.	.	.	.	.	.
Template Sequence		M	A	R	E	I	F	P	K	A	P	L	K	Y	M	P	P	T	K	F	M	T	G	N	I	F	K	G	H	I	Q	D	A	L	F	N	M	V	.	.	.	.	.	.	.	.	T	I	M	T	N	Q	R	I	H	L	L	G	M	L	T	E	A	L	H	T	P	F	M	S	D	R	A	L	S	I	E	N	A	Q	Y
Template Known Secondary structure							S	T	T	S									T	T			S																.	.	.	.	.	.	.	.					T		S							T	T	T	T	T	S	S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.									.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	Q	E	E	S	E	L	C	R	T	V	D	P	L	A	G	S	Y	Y	I	E	S	L	T	D	Q	I	V	K	Q	A	R	A	I	I	Q	Q	I	D	E	A	G	G	M	A	K	A	I	E	A	G	L
Query Conservation
Alig confidence																			.																									.
Template Conservation																			.																									.
Template Sequence		I	F	N	N	M	E	S	I	S	E	E	I	Q	F	K	E	D	.	G	L	I	Q	K	R	A	G	F	V	L	E	K	A	N	E	L	L	E	E	I	E	Q	L	.	G	L	F	D	T	L	E	K	G	I
Template Known Secondary structure						T	T	T									T	T	.	S																								.								T	T	T
Template Predicted Secondary structure																			.																									.
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.		.	.	.	.	.	.	.	.	480	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions