Return to main results Retrieve Phyre Job Id

Job DescriptionP27253
Confidence53.01%DateThu Jan 5 11:43:33 GMT 2012
Rank265Aligned Residues106
% Identity14%Templatec3re1B_
PDB info PDB header:lyaseChain: B: PDB Molecule:uroporphyrinogen-iii synthetase; PDBTitle: crystal structure of uroporphyrinogen iii synthase from pseudomonas2 syringae pv. tomato dc3000
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   598.600.........610.........620. ........630.........640.........650.........660.... .....
Predicted Secondary structure 












......













..

Query SS confidence 























. . . . . .










































. .




Query Sequence  DRGAKVIASAYSDLGFDVDLSPMF. . . . . . STPEEIARLAVENDVHVVGASSLAAGHKTLIPELVEALKKWGR. . EDICV
Query Conservation   


 
   

  




     
...... 
 

 
 
   


 
 





  
 
    
  


 

 ..    
Alig confidence 























......





















.....















..




Template Conservation        
   
   
  
    

                     
 
 


..... 
 
             
    
Template Sequence  NEGRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSS. . . . . GQGFEHLLQLAGDSWPDLAGLPL
Template Known Secondary structure  SSS
TT






TTTT


SS.....TGGGTTS
Template Predicted Secondary structure 






















.....

Template SS confidence 















































































   139140.........150.........160.........170.........180.........190 .........200.........210...
 
   670.........680.........690.........700.........710.
Predicted Secondary structure 












Query SS confidence 









































Query Sequence  VAGGVIPPQDYAFLQERGVAAIYGPGTPMLDSVRDVLNLISQ
Query Conservation 



  
      
  


      
                
Alig confidence 



...


































Template Conservation 
 

...  

  
   
     

  

   

 

     
Template Sequence  FVPS. . . PRVASLAQAAGARNVIDCRGASAAALLAALRDQPQ
Template Known Secondary structure  SS...T
SS
SSSSTS

Template Predicted Secondary structure 

...








Template SS confidence 









































   214... ..220.........230.........240.........250..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions