Job Description P27253 Confidence 99.39% Date Thu Jan 5 11:43:33 GMT 2012 Rank 12 Aligned Residues 649 % Identity 17% Template c3koxA_ PDB info PDB header:metal binding protein Chain: A: PDB Molecule:d-ornithine aminomutase e component; PDBTitle: crystal structure of ornithine 4,5 aminomutase in complex with 2,4-2 diaminobutyrate (anaerobic) Resolution 2.40 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		Q	L	A	N	K	E	L	S	R	R	E	K	T	V	D	S	L	V	H	Q	T	A	.	E	G	I	A	I	K	P	L	Y	T	E	A	D	L	D	N	L	E	V	T	G	T	L	P	G	L	P	P	Y	V	R	G	P	R	A	T	M	Y	T	A	Q	P	W	T	I	R	Q	Y	A	G	F	S	T	A	K	E	S
Query Conservation																								.
Alig confidence																								.																									.													.	.	.					.
Template Conservation																																																	.													.	.	.					.
Template Sequence		E	N	I	L	K	D	L	D	K	Y	T	P	K	R	R	G	W	T	W	R	Q	P	A	E	N	L	Q	M	G	P	F	I	Y	K	D	A	S	T	P	L	E	N	S	V	A	L	P	.	S	A	K	Y	F	G	D	I	D	P	Q	P	.	.	.	L	P	V	I	.	T	T	E	I	A	S	G	R	F	E	D	D
Template Known Secondary structure					T	T	T	G	G	G				S			S						B		T	T				T	T				S	S						S	S					G	.	G	G	G	G	G	T	T						.	.	.	S	S			.						S	S
Template Predicted Secondary structure																																																	.													.	.	.					.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.				150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																																																.	.	.
Query SS confidence																																																																.	.	.
Query Sequence		N	A	F	Y	R	R	N	L	A	A	G	Q	K	G	L	S	V	A	F	D	L	A	T	H	R	G	Y	D	S	D	N	P	R	V	A	G	D	V	G	K	A	G	V	A	I	D	T	V	E	D	M	K	V	L	F	D	Q	I	P	L	D	K	.	.	.	M	S	V	S	M	T	M	N	G	A	V	L	P	V	L
Query Conservation																																																																.	.	.
Alig confidence																			.																																													.	.	.
Template Conservation																			.
Template Sequence		I	R	R	M	R	M	A	A	W	H	G	A	D	H	I	M	V	.	I	R	T	A	G	Q	S	H	Y	D	G	L	I	E	G	T	P	Q	G	I	G	G	V	P	I	T	R	K	Q	V	R	A	Q	R	K	A	L	D	L	I	E	E	E	V	G	R	P	I	N	Y	H	S	Y	V	S	G	V	A	G	P	D	I
Template Known Secondary structure											T	T							.		B	S	T	T	G	G	G		S	S				S					S	S	S	B																						T	S										S	T	T
Template Predicted Secondary structure																			.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		A	F	Y	I	V	A	A	E	E	Q	G	V	T	P	D	K	L	T	G	T	I	Q	N	D	I	L	K	E	Y	L	C	R	N	T	Y	I	Y	P	P	K	P	S	M	R	I	I	A	D	I	I	A	W	C	S	G	N	M	P	R	F	N	T	I	S	I	S	G	Y	H	M	G	E	A	G	A	.	N	C	V	Q
Query Conservation																																																																													.
Alig confidence							.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.													.																								.
Template Conservation							.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.													.
Template Sequence		A	V	M	F	A	.	.	.	.	.	.	.	.	E	E	G	V	N	G	A	H	Q	D	P	Q	Y	N	V	L	Y	R	N	.	.	.	.	.	.	.	I	N	M	I	R	S	F	I	D	A	C	E	.	S	K	T	I	M	A	W	A	D	M	A	Q	I	D	G	A	H	N	A	N	A	T	A	R	E	A	W	K
Template Known Secondary structure							.	.	.	.	.	.	.	.			T																	.	.	.	.	.	.	.	B												.								T	T						S	T								S	S	G	G	G
Template Predicted Secondary structure							.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.													.
Template SS confidence
		170	.	.	.	.									.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.								.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		Q	V	A	F	T	L	A	D	G	I	E	Y	I	K	A	A	I	S	A	G	L	K	I	D	D	F	A	P	R	L	S	F	F	F	G	I	G	M	D	.	L	F	M	N	V	A	M	L	R	A	A	R	Y	L	W	S	E	A	V	S	G	F	G	A	Q	D	P	K	S	L	A	L	R	T	H	C	Q	T	S	G
Query Conservation																																									.
Alig confidence																																									.																			.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.
Template Sequence		V	M	P	E	L	M	V	Q	H	A	L	N	S	I	F	S	L	K	V	G	M	K	K	S	N	I	C	L	S	T	V	P	P	T	A	P	P	A	P	S	M	Y	L	D	L	P	Y	A	V	A	L	R	E	M	F	E	G	Y	.	.	.	.	.	.	.	R	M	R	A	Q	M	N	T	K	Y	M	E	A	S	T
Template Known Secondary structure																					T			G	G	G								S			T	T	S																	T	T	T	S	.	.	.	.	.	.	.									S	S			S
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.								.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		W	S	L	T	E	Q	D	P	Y	N	N	V	I	R	T	T	I	E	A	L	A	A	T	L	G	G	T	Q	S	L	H	T	N	A	F	D	E	A	L	G	L	P	T	D	F	S	A	R	I	A	R	.	N	T	Q	I	I	I	Q	E	E	S	E	L	C	R	T	V	D	P	L	A	G	S	Y	Y	I	E	S	L
Query Conservation																																																					.
Alig confidence															.	.	.	.	.	.	.	.																															.																						.
Template Conservation															.	.	.	.	.	.	.	.																																																					.
Template Sequence		R	E	A	T	V	T	H	V	L	N	L	L	I	.	.	.	.	.	.	.	.	S	K	L	T	R	A	D	I	Q	S	T	I	T	P	D	E	G	R	N	V	P	W	H	I	Y	N	I	E	A	C	D	T	A	K	Q	A	L	I	G	M	D	G	L	M	D	M	V	Q	L	K	R	E	.	G	V	L	G	D	T
Template Known Secondary structure															.	.	.	.	.	.	.	.				S			S							T	T	T	T	T	S	S																				T	T	T	G	G	G	T						S	.	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.																																																					.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.									.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.		.	.	.	.	.	380
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.																																									.	.	.	.	.	.	440	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	D	Q	I	V	K	Q	A	R	A	I	I	Q	Q	I	D	E	A	G	G	M	A	K	A	I	E	A	G	L	P	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	I	E	E	A	S	A	R
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	E	L	K	E	R	A	V	L	F	M	E	E	I	I	E	A	G	G	Y	F	N	A	V	E	Q	G	F	F	V	D	S	G	Y	Y	P	E	R	N	G	D	G	I	A	R	Q	I	N	G	G	I	G	A	G	T	V	F	E	R	D	E	D	Y	M	A	P	V	T	A	H	F	G	Y	N	N	V	K	Q	Y
Template Known Secondary structure																			T	T	S							T	T		T	T		S	S		T	T				S							T	T		S	B	T	T	T							T	T					S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	S	L	I	D	Q	G	K	R	V	I	V	G	V	N	K	Y	K	L	D	H	E	D	E	T	D	V	L	E	I	D	N	V	M	V	R	N	E	Q	I	A	S	L	E	R	I	R	A	T	R	D	D	A	A	V	T	A	A	L	N	A	L	T	H	A	A	Q	H	N	E	N	L	L	A	A	A	V	N	A
Query Conservation
Alig confidence																					.	.																																.
Template Conservation																					.	.																																.
Template Sequence		D	E	A	L	V	S	E	P	S	K	L	I	D	G	C	T	L	E	V	.	.	P	E	K	I	V	Y	I	D	E	L	D	E	N	D	N	V	N	V	R	M	E	E	T	K	E	F	R	S	M	I	K	.	P	E	V	E	W	Q	A	D	G	T	V	L	L	T	M	F	L	P	T	S	K	R	V	A	E	F	A
Template Known Secondary structure			G	G	G	G	G		G	G	G	G	G	T			T	T	T		.	.	G	G	G							S		S	S	S	S							T	T	T	T							.			S	S	S	T	T											S	S
Template Predicted Secondary structure																					.	.																																.
Template SS confidence
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.			480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510		.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
		522	.				.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.										.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.																				.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.																				.	.	.	.	.	.	.	.	.
Query Sequence		A	R	.	.	.	V	R	A	T	L	G	E	I	S	D	A	L	E	V	A	F	D	R	Y	.	.	.	.	.	.	.	.	.	L	V	P	S	Q	C	V	T	G	V	I	A	Q	S	Y	H	Q	S	E	K	S	A	S	E	F	D	A	I	V	A	Q	T	E	Q	F	L	A	D	N	G	R	R	P	R	I	L	I
Query Conservation				.	.	.																				.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.																				.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.													.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.													.	.	.	.	.	.
Template Sequence		A	I	E	F	A	K	K	M	N	L	E	E	V	E	V	I	N	R	E	V	M	Q	E	A	E	G	T	R	I	E	L	K	G	R	V	P	F	S	I	D	I	N	S	L	V	I	P	P	I	.	.	.	.	.	.	L	S	E	D	E	I	R	E	D	I	E	K	.	.	.	.	.	.	T	P	L	K	I	V	A
Template Known Secondary structure									T	T														T	T	T												S				G	G	G							.	.	.	.	.	.													.	.	.	.	.	.	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.													.	.	.	.	.	.
Template SS confidence
		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.							.	590	.	.	.	.	.	.	.	.	.	600							.	.	.	.	.	.	.
		590	.	.	.	.	.	.	.	.			.	600	.			.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.				.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.
Predicted Secondary structure											.	.				.	.																																												.	.	.
Query SS confidence											.	.				.	.																																												.	.	.
Query Sequence		A	K	M	G	Q	D	G	H	D	.	.	R	G	A	.	.	K	V	I	A	S	A	Y	S	D	L	G	F	D	V	D	L	S	P	M	F	S	T	P	E	E	I	A	R	L	A	V	E	N	D	V	H	V	V	G	A	S	S	L	.	.	.	A	A	G	H	K	T	L	I	P	E	L	V	E	A	L	K	K	W
Query Conservation											.	.				.	.																																												.	.	.
Alig confidence											.	.				.	.																																												.	.	.
Template Conservation
Template Sequence		A	T	V	G	E	D	E	H	S	V	G	L	R	E	V	I	D	I	K	H	G	G	I	E	K	Y	G	V	E	V	H	Y	L	G	T	S	V	P	V	E	K	L	V	D	A	A	I	E	L	K	A	D	A	I	L	A	S	T	I	I	S	H	D	D	I	H	Y	K	N	M	K	R	I	H	E	L	A	V	E	K
Template Known Secondary structure					T	T										T	T	S	G	G	G	T		G	G	G	G	T																							T		S										G	G	G
Template Predicted Secondary structure
Template SS confidence
		611	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690
		663	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	E	D	I	C	V	V	A	G	G	V	I	P	P	Q	D	Y	A	F	L	Q	E	R	G	V	A	A	I	Y	G	P	G	T	P	M	L	D	S	V	R	D	V	L	N	L	I	S	Q
Query Conservation
Alig confidence														.
Template Conservation														.
Template Sequence		G	I	R	D	K	I	M	I	G	C	G	G	.	T	Q	V	T	P	E	V	A	V	K	Q	G	V	D	A	G	F	G	R	G	S	K	G	I	H	V	A	T	F	L	V	K	K	R	R	E
Template Known Secondary structure		T		T	T	T	S							.	T	T									T	T		S					T	T
Template Predicted Secondary structure														.
Template SS confidence
		691	.	.	.	.	.	.	.	.	700	.	.		.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.