Job Description P27253 Confidence 23.26% Date Thu Jan 5 11:43:33 GMT 2012 Rank 498 Aligned Residues 130 % Identity 13% Template c3h5lB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi Resolution 1.70 Å

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		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580								.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.					620	.	.	.	.	.	.	.	.	.	630
Predicted Secondary structure																					.	.	.	.	.	.	.																																								.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.																																								.	.	.	.
Query Sequence		K	S	A	S	E	F	D	A	I	V	A	Q	T	E	Q	F	L	A	D	.	.	.	.	.	.	.	N	G	R	R	P	R	I	L	I	A	K	M	G	Q	D	G	H	D	R	G	A	K	V	I	A	S	A	Y	S	D	L	G	F	D	V	D	L	S	P	.	.	.	.	M	F	S	T	P	E	E	I	A	R	L
Query Conservation																					.	.	.	.	.	.	.																																								.	.	.	.
Alig confidence																					.	.	.	.	.	.	.																																								.	.	.	.
Template Conservation
Template Sequence		Q	Y	D	P	P	E	T	L	Y	G	G	G	F	L	K	F	L	K	D	I	E	D	N	G	E	F	S	R	P	N	N	K	I	A	I	I	T	G	P	G	I	Y	S	V	N	I	A	N	A	I	R	D	G	A	G	E	Y	G	Y	D	V	S	L	F	E	T	V	A	I	P	V	S	D	W	G	P	T	L	A	K
Template Known Secondary structure			S	S			T																	T	T	S				S	S	S								S	S														G	G	G	G	T											S	S		S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		631	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	E	N	D	V	H	V	V	G	A	S	S	L	A	A	G	H	K	T	L	I	P	E	L	V	E	A	L	K	K	W	G	R	E	D	I	C	V	V	A	G	G	V	I	P	P	Q	D	Y	A	F	L	Q	E	R	G	V	A	A	I	Y	G	P
Query Conservation
Alig confidence																.	.	.
Template Conservation																.	.	.
Template Sequence		L	R	A	D	P	P	A	V	I	V	V	T	H	F	.	.	.	Y	P	Q	D	Q	A	L	F	M	N	Q	F	M	T	D	P	T	N	S	L	V	Y	L	Q	Y	G	A	S	L	A	A	F	R	D	I	A	G	D	N	S	V	G	V	T	Y	A	T
Template Known Secondary structure					S			S								.	.	.													T	T	S			S							S	G	G	G	S								G	G	G	G	T	T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.				.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions