 |
Job Description | P27253 | Confidence | 91.60% | Date | Thu Jan 5 11:43:33 GMT 2012 |
Rank | 48 | Aligned Residues | 80 |
% Identity | 16% | Template | c3eooL_ |
PDB info |
PDB header:lyase | Chain: L: PDB Molecule:methylisocitrate lyase; |
PDBTitle: 2.9a crystal structure of methyl-isocitrate lyase from2 burkholderia pseudomallei
|
Resolution | 2.90 Å |
|
 |
  |   |
628 | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | R | L | A | V | E | N | D | V | H | V | V | G | A | S | S | L | A | A | G | H | K | T | L | I | P | E | L | V | E | A | L | K | K | W | G | R | E | D | I | C | V | V | A | G | G | V | I | P | P | Q | D | Y | A | F | L | Q | E | R | G | V | A | A | I | Y | G | P | G | T | P | M | L | D | S | V | R | D | V | L | N |
Query Conservation |   |
|   |
|   |   |   |
|
|
|   |
|   |
|
|
|
|
|
|   |   |
|   |
|   |   |   |   |
|   |   |
|
|
|   |
|
|   |   |   |   |   |
|
|
|
|
|   |   |
|   |   |   |   |   |   |
|   |   |
|
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |   |
|
|
|
|   |
|
|
|   |   |   |   |   | . | . |   |
|   |   |   |   |   |   |   |   |   |   | . | . |   |
|   |   |   |   |   |   |   |   |
|   |
|
|   |   |   |   |   |
|
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |
Template Sequence |   |
A | I | A | Y | V | E | A | G | A | D | M | I | F | P | E | A | M | K | T | . |
. |
L | D | D | Y | R | R | F | K | E | A | V | K | . |
. |
V | P | I | L | A | N | L | T | E | F | G | S | T | P | L | F | T | L | D | E | L | K | G | A | N | V | D | I | A | L | Y | C | C | G | A | Y | R | A | M | N | K | A | A | L | N |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T |
| S |  |  |  |  |
|
|
|
| S | . | . |  |  |  |  |  |  |  |  |  |  |  |
| . | . | S |
| B |  |  |  |
|
| T | T | S | S | S |
|
|
|
|  |  |  |  |  |  | T | T |
|
|  |  |  |  |
| S |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
| . | . |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
176 | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | |
|
. | . | . | . | . | 200 | . | . | . | . | . | . | |
|
. | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . |
  |
  |   |
708 | . | 710 | . |
Predicted Secondary structure |   |
 |  |  |  |
Query SS confidence |   |
|
|
|
|
Query Sequence |   |
L | I | S | Q |
Query Conservation |   |
  |   |   |   |
Alig confidence |   |
|
|
|
|
Template Conservation |   |
  |   |   |   |
Template Sequence |   |
F | Y | E | T |
Template Known Secondary structure |   |
 |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
Template SS confidence |   |
|
|
|
|
  |   |
252 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|